BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008767
         (431 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    59   4e-07

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
 Frame = +2

Query: 2   PGRSGWGNTFRDXXXXXXXXXXXXXXXXTNKMAEAGAILEGIKKALELGWTSIWVETDSK 181
           P     G  FR+                T   AE  A +  I+K++E     IW+ETDSK
Sbjct: 23  PSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEYNLRDIWLETDSK 82

Query: 182 AMTQAFQQNK-IHWSMKDTWQQ---LERGFMDSITHTWREVNFAADCMSKYGATLPAGVH 349
            + +AF  ++ + W ++  W     L +      TH  RE N  AD ++K G +L     
Sbjct: 83  LVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGADSLAKNGKSLALLTS 142

Query: 350 RWWGVRPKF 376
           +WW   P F
Sbjct: 143 QWWSSSPLF 151