BLASTX nr result

ID: Coptis23_contig00008752 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008752
         (1647 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276691.1| PREDICTED: putative RNA-binding protein Luc7...   335   e-130
emb|CAN71034.1| hypothetical protein VITISV_000356 [Vitis vinifera]   332   e-128
ref|NP_001239802.1| uncharacterized protein LOC100793888 [Glycin...   317   e-122
ref|XP_003534502.1| PREDICTED: putative RNA-binding protein Luc7...   317   e-122
ref|XP_004138908.1| PREDICTED: putative RNA-binding protein Luc7...   318   e-121

>ref|XP_002276691.1| PREDICTED: putative RNA-binding protein Luc7-like 2 [Vitis vinifera]
            gi|297735244|emb|CBI17606.3| unnamed protein product
            [Vitis vinifera]
          Length = 419

 Score =  335 bits (859), Expect(2) = e-130
 Identities = 175/223 (78%), Positives = 190/223 (85%)
 Frame = -3

Query: 1633 MDALRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGACSKIH 1454
            MDA+RKQLDVLMGANRNGDV EVNRKYYDRDVCRLFL GLCPH+LFQLTKMDMG C K+H
Sbjct: 1    MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLFLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 1453 SLQLRKEYQDAKGKGVHSYDRELEDVIDRLIVECDRKIARALKRLEEADAKAAIAISVSE 1274
            SLQLRKEY++AK KGVH+YDR+LEDVIDRLIVECDRKIARALKRLE+ DAKAAIAISVSE
Sbjct: 61   SLQLRKEYEEAKAKGVHNYDRDLEDVIDRLIVECDRKIARALKRLEDEDAKAAIAISVSE 120

Query: 1273 VTQTPELLELSKQIKEKLKEVDRLDYEGETDSKIRALEMLEELRTKRADKQSVLLLDAFN 1094
            VTQTPE+LELSKQIKEKLKE D+ D EG+TDSKIRALE++EELRTKRADKQS+LLLDAFN
Sbjct: 121  VTQTPEVLELSKQIKEKLKEADQFDLEGKTDSKIRALEVVEELRTKRADKQSMLLLDAFN 180

Query: 1093 KDRXXXXXXXXXXXXXXXXXXXXXXXPQTQEMINEKLKKAEFL 965
            KDR                       P+TQEMINEKLKKAE L
Sbjct: 181  KDR-ASLPQPLPNPPPLAPLPVLAPDPRTQEMINEKLKKAEDL 222



 Score =  159 bits (402), Expect(2) = e-130
 Identities = 88/156 (56%), Positives = 98/156 (62%)
 Frame = -1

Query: 888 EQGMVDEAQXXXXXXXXXXXLGARQEGLLDASKYSAADVRITDQKLRVCDICGAFLSVYD 709
           EQGM+DEAQ           L  RQE +LD+SKY+AADVRITDQKLRVCDICGAFLSVYD
Sbjct: 224 EQGMIDEAQKALEEAEALKKLAPRQEPVLDSSKYTAADVRITDQKLRVCDICGAFLSVYD 283

Query: 708 SDRRLADHFGGKLHLGYMQIRXXXXXXXXXXXAGRKVARSEDDRRSKERKQDHERASSKD 529
           SDRRLADHFGGKLHLGYMQIR             RKV R E+DRRSKER +DH+R +SKD
Sbjct: 284 SDRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKVDRHENDRRSKERSRDHDREASKD 343

Query: 528 QVXXXXXXXXXXXXXXXXXXXXXXXXXRYHDRDHGY 421
           +                          RYHDRD G+
Sbjct: 344 RA--------DSRERGRDHDRRSRDRDRYHDRDRGH 371


>emb|CAN71034.1| hypothetical protein VITISV_000356 [Vitis vinifera]
          Length = 419

 Score =  332 bits (851), Expect(2) = e-128
 Identities = 174/223 (78%), Positives = 189/223 (84%)
 Frame = -3

Query: 1633 MDALRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGACSKIH 1454
            MDA+RKQLDVLMGANRNGDV EVNRKYYDRDVCRLFL GLCPH+LFQLTKMDMG C K+H
Sbjct: 1    MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLFLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 1453 SLQLRKEYQDAKGKGVHSYDRELEDVIDRLIVECDRKIARALKRLEEADAKAAIAISVSE 1274
            SLQLRKEY++AK KGVH+YDR+LEDVIDRLIVECDRKIARALKRLE+ DAKAAIAISVSE
Sbjct: 61   SLQLRKEYEEAKAKGVHNYDRDLEDVIDRLIVECDRKIARALKRLEDEDAKAAIAISVSE 120

Query: 1273 VTQTPELLELSKQIKEKLKEVDRLDYEGETDSKIRALEMLEELRTKRADKQSVLLLDAFN 1094
            VTQT E+LELSKQIKEKLKE D+ D EG+TDSKIRALE++EELRTKRADKQS+LLLDAFN
Sbjct: 121  VTQTAEVLELSKQIKEKLKEADQFDLEGKTDSKIRALEVVEELRTKRADKQSMLLLDAFN 180

Query: 1093 KDRXXXXXXXXXXXXXXXXXXXXXXXPQTQEMINEKLKKAEFL 965
            KDR                       P+TQEMINEKLKKAE L
Sbjct: 181  KDR-ASLPQPLPNPPPLAPLPVLSPDPRTQEMINEKLKKAEDL 222



 Score =  156 bits (394), Expect(2) = e-128
 Identities = 87/156 (55%), Positives = 97/156 (62%)
 Frame = -1

Query: 888 EQGMVDEAQXXXXXXXXXXXLGARQEGLLDASKYSAADVRITDQKLRVCDICGAFLSVYD 709
           EQGM+DEAQ           L  RQE +LD+SKY+AADVRITDQKLRVCDICGAFLSVYD
Sbjct: 224 EQGMIDEAQKALEEAEALKKLAPRQEPVLDSSKYTAADVRITDQKLRVCDICGAFLSVYD 283

Query: 708 SDRRLADHFGGKLHLGYMQIRXXXXXXXXXXXAGRKVARSEDDRRSKERKQDHERASSKD 529
           SDRRLADHFGGKLHLGYMQIR             RKV R E+DRRSKER +D +R +SKD
Sbjct: 284 SDRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKVDRHENDRRSKERSRDRDREASKD 343

Query: 528 QVXXXXXXXXXXXXXXXXXXXXXXXXXRYHDRDHGY 421
           +                          RYHDRD G+
Sbjct: 344 RA--------DSRERGRDHDRRSRDRDRYHDRDRGH 371


>ref|NP_001239802.1| uncharacterized protein LOC100793888 [Glycine max]
            gi|255636477|gb|ACU18577.1| unknown [Glycine max]
          Length = 414

 Score =  317 bits (812), Expect(2) = e-122
 Identities = 166/223 (74%), Positives = 183/223 (82%)
 Frame = -3

Query: 1633 MDALRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGACSKIH 1454
            MDA+RKQLDVLMGANRNGDV EVNRKYYDRDVCRL+L GLCPH+LFQLTKMDMG C K+H
Sbjct: 1    MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 1453 SLQLRKEYQDAKGKGVHSYDRELEDVIDRLIVECDRKIARALKRLEEADAKAAIAISVSE 1274
            SLQLRKEY++AK KG  +YDRELEDVID+LI ECDRKI RALKRLE+ DAKAAIAISVSE
Sbjct: 61   SLQLRKEYEEAKAKGTDNYDRELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSE 120

Query: 1273 VTQTPELLELSKQIKEKLKEVDRLDYEGETDSKIRALEMLEELRTKRADKQSVLLLDAFN 1094
            VTQT E+LELSKQIKEKLKE D+ D EG++D KIRALE++EELRTKRADKQS+LLLDAFN
Sbjct: 121  VTQTDEVLELSKQIKEKLKEADQYDLEGKSDLKIRALEVVEELRTKRADKQSMLLLDAFN 180

Query: 1093 KDRXXXXXXXXXXXXXXXXXXXXXXXPQTQEMINEKLKKAEFL 965
            KDR                        +TQEMINEKLKKAE L
Sbjct: 181  KDR-ASLPTPLPNPPPLAPLPVVAPDARTQEMINEKLKKAEDL 222



 Score =  149 bits (377), Expect(2) = e-122
 Identities = 81/120 (67%), Positives = 87/120 (72%)
 Frame = -1

Query: 888 EQGMVDEAQXXXXXXXXXXXLGARQEGLLDASKYSAADVRITDQKLRVCDICGAFLSVYD 709
           EQGMVDEAQ           L ARQE +LD+SKY+AADVRITDQKLRVCDICGAFLSVYD
Sbjct: 224 EQGMVDEAQKALEEAEALKKLPARQEPVLDSSKYTAADVRITDQKLRVCDICGAFLSVYD 283

Query: 708 SDRRLADHFGGKLHLGYMQIRXXXXXXXXXXXAGRKVARSEDDRRSKERKQDHERASSKD 529
           SDRRLADHFGGKLHLGYMQIR             RK  R  DDRRSKER +D +R SS+D
Sbjct: 284 SDRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKTDRL-DDRRSKERSRDRDRESSRD 342


>ref|XP_003534502.1| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Glycine
            max]
          Length = 414

 Score =  317 bits (812), Expect(2) = e-122
 Identities = 166/223 (74%), Positives = 183/223 (82%)
 Frame = -3

Query: 1633 MDALRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGACSKIH 1454
            MDA+RKQLDVLMGANRNGDV EVNRKYYDRDVCRL+L GLCPH+LFQLTKMDMG C K+H
Sbjct: 1    MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 1453 SLQLRKEYQDAKGKGVHSYDRELEDVIDRLIVECDRKIARALKRLEEADAKAAIAISVSE 1274
            SLQLRKEY++AK KG  +YDRELEDVID+LI ECDRKI RALKRLE+ DAKAAIAISVSE
Sbjct: 61   SLQLRKEYEEAKAKGTDNYDRELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSE 120

Query: 1273 VTQTPELLELSKQIKEKLKEVDRLDYEGETDSKIRALEMLEELRTKRADKQSVLLLDAFN 1094
            VTQT E+LELSKQIKEKLKE D+ D EG++D KIRALE++EELRTKRADKQS+LLLDAFN
Sbjct: 121  VTQTDEVLELSKQIKEKLKEADQYDLEGKSDLKIRALEVVEELRTKRADKQSMLLLDAFN 180

Query: 1093 KDRXXXXXXXXXXXXXXXXXXXXXXXPQTQEMINEKLKKAEFL 965
            KDR                        +TQEMINEKLKKAE L
Sbjct: 181  KDR-ASLPTPLPNPPPLAPLPVVAPDARTQEMINEKLKKAEDL 222



 Score =  148 bits (374), Expect(2) = e-122
 Identities = 80/121 (66%), Positives = 87/121 (71%)
 Frame = -1

Query: 888 EQGMVDEAQXXXXXXXXXXXLGARQEGLLDASKYSAADVRITDQKLRVCDICGAFLSVYD 709
           EQGMVDEAQ           L ARQE +LD+SKY+A DVRITDQKLRVCDICGAFLSVYD
Sbjct: 224 EQGMVDEAQKALEEAEALKKLPARQEPVLDSSKYTAVDVRITDQKLRVCDICGAFLSVYD 283

Query: 708 SDRRLADHFGGKLHLGYMQIRXXXXXXXXXXXAGRKVARSEDDRRSKERKQDHERASSKD 529
           SDRRLADHFGGKLHLGYMQIR             RK  R  DDRRSKER +D +R SS+D
Sbjct: 284 SDRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKTDRL-DDRRSKERSRDRDRESSRD 342

Query: 528 Q 526
           +
Sbjct: 343 R 343


>ref|XP_004138908.1| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Cucumis
            sativus] gi|449506274|ref|XP_004162701.1| PREDICTED:
            putative RNA-binding protein Luc7-like 2-like [Cucumis
            sativus]
          Length = 413

 Score =  318 bits (816), Expect(2) = e-121
 Identities = 165/223 (73%), Positives = 184/223 (82%)
 Frame = -3

Query: 1633 MDALRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGACSKIH 1454
            MDA R+QLD LMGANRNGDV EV+RKYYDRDVCR+FL GLCPH+LFQLTKMDMG C KIH
Sbjct: 1    MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 1453 SLQLRKEYQDAKGKGVHSYDRELEDVIDRLIVECDRKIARALKRLEEADAKAAIAISVSE 1274
            SLQLRKEY++ K KG+H+YDR+LEDVIDRLI+ECDRKIARALKRLEE DAKAAIAISVSE
Sbjct: 61   SLQLRKEYEEGKAKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSE 120

Query: 1273 VTQTPELLELSKQIKEKLKEVDRLDYEGETDSKIRALEMLEELRTKRADKQSVLLLDAFN 1094
            VTQ PE+LELSK+IKEKLKE D+ D EG+TD KIR LE++EELRT+RADKQS+LLLDAFN
Sbjct: 121  VTQIPEVLELSKEIKEKLKEADQYDLEGKTDLKIRVLEVVEELRTRRADKQSMLLLDAFN 180

Query: 1093 KDRXXXXXXXXXXXXXXXXXXXXXXXPQTQEMINEKLKKAEFL 965
            KDR                       P+TQEMINEKLKKAE L
Sbjct: 181  KDR-ASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEEL 222



 Score =  146 bits (369), Expect(2) = e-121
 Identities = 78/121 (64%), Positives = 88/121 (72%)
 Frame = -1

Query: 888 EQGMVDEAQXXXXXXXXXXXLGARQEGLLDASKYSAADVRITDQKLRVCDICGAFLSVYD 709
           EQGM+DEAQ           L ARQE ++D+SKY+AADVRITDQKLRVCDICGAFLSVYD
Sbjct: 224 EQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRITDQKLRVCDICGAFLSVYD 283

Query: 708 SDRRLADHFGGKLHLGYMQIRXXXXXXXXXXXAGRKVARSEDDRRSKERKQDHERASSKD 529
           SDRRLADHFGGKLHLGYMQIR             RKV R  DDRRSKER ++ +R  S+D
Sbjct: 284 SDRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKVDR-HDDRRSKERSREPDREPSRD 342

Query: 528 Q 526
           +
Sbjct: 343 R 343


Top