BLASTX nr result
ID: Coptis23_contig00008680
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00008680
(770 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g... 320 2e-85
ref|XP_003578512.1| PREDICTED: transcription initiation factor I... 319 4e-85
dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare] 319 4e-85
ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [S... 318 1e-84
ref|XP_002277679.1| PREDICTED: transcription initiation factor I... 316 4e-84
>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|18481632|gb|AAL73491.1|AF464908_1 general
transcription factor TFIIB [Oryza sativa]
gi|50725809|dbj|BAD33339.1| Transcription initiation
factor IIB [Oryza sativa Japonica Group]
gi|50726577|dbj|BAD34211.1| Transcription initiation
factor IIB [Oryza sativa Japonica Group]
gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
protein OsI_32170 [Oryza sativa Indica Group]
gi|125606444|gb|EAZ45480.1| hypothetical protein
OsJ_30135 [Oryza sativa Japonica Group]
gi|347737122|gb|AEP20532.1| transcription factor [Oryza
sativa Japonica Group]
Length = 312
Score = 320 bits (821), Expect = 2e-85
Identities = 160/171 (93%), Positives = 169/171 (98%)
Frame = +1
Query: 1 KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMG 180
KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMG
Sbjct: 140 KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMG 199
Query: 181 QSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQ 360
QSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQ
Sbjct: 200 QSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQ 259
Query: 361 LSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEEDLRNLC 513
LSD+KKPL+DISLATGVAEGTIRNSYKDLYPYASRLIP+++AKEEDL+NLC
Sbjct: 260 LSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLC 310
>ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 312
Score = 319 bits (818), Expect = 4e-85
Identities = 159/171 (92%), Positives = 169/171 (98%)
Frame = +1
Query: 1 KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMG 180
KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMG
Sbjct: 140 KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMG 199
Query: 181 QSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQ 360
QSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQ
Sbjct: 200 QSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQ 259
Query: 361 LSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEEDLRNLC 513
LS++KKPL+DISLATGVAEGTIRNSYKDLYPYASRLIP+++AKEEDL+NLC
Sbjct: 260 LSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLC 310
>dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 312
Score = 319 bits (818), Expect = 4e-85
Identities = 159/171 (92%), Positives = 169/171 (98%)
Frame = +1
Query: 1 KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMG 180
KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMG
Sbjct: 140 KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMG 199
Query: 181 QSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQ 360
QSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQ
Sbjct: 200 QSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQ 259
Query: 361 LSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEEDLRNLC 513
LS++KKPL+DISLATGVAEGTIRNSYKDLYPYA+RLIP+S+AKEEDL+NLC
Sbjct: 260 LSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNSYAKEEDLKNLC 310
>ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
gi|241923949|gb|EER97093.1| hypothetical protein
SORBIDRAFT_02g031020 [Sorghum bicolor]
Length = 312
Score = 318 bits (814), Expect = 1e-84
Identities = 158/171 (92%), Positives = 169/171 (98%)
Frame = +1
Query: 1 KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMG 180
KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMG
Sbjct: 140 KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMG 199
Query: 181 QSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQ 360
QSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQ
Sbjct: 200 QSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQ 259
Query: 361 LSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEEDLRNLC 513
LS++KKPL+DISLATGVAEGTIRNSYKDLYPYA+RLIP+++AKEEDL+NLC
Sbjct: 260 LSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNTYAKEEDLKNLC 310
>ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
gi|297734946|emb|CBI17180.3| unnamed protein product
[Vitis vinifera]
Length = 314
Score = 316 bits (809), Expect = 4e-84
Identities = 156/171 (91%), Positives = 167/171 (97%)
Frame = +1
Query: 1 KSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMG 180
K +RGRNQDAILAAC+YIACRQED+PRTVKEICSVANGATKKE+GRAKE+IVKQLEVEMG
Sbjct: 142 KPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEVEMG 201
Query: 181 QSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQ 360
QSMEMGTIHAGDFLRRFCSHLGM N A+KAAQEAVQKSEELDIRRSPIS+AAAVIYMITQ
Sbjct: 202 QSMEMGTIHAGDFLRRFCSHLGMTNQAVKAAQEAVQKSEELDIRRSPISVAAAVIYMITQ 261
Query: 361 LSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEEDLRNLC 513
LSD+KK L+DISLATGVAEGTIRNSYKDLYPYASR+IPSS+AKEEDLRNLC
Sbjct: 262 LSDDKKLLKDISLATGVAEGTIRNSYKDLYPYASRIIPSSYAKEEDLRNLC 312