BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008678
         (878 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32131.3| unnamed protein product [Vitis vinifera]              453   e-125
ref|XP_002263653.1| PREDICTED: U4/U6 small nuclear ribonucleopro...   453   e-125
ref|XP_003622426.1| U4/U6 small nuclear ribonucleoprotein Prp31 ...   437   e-120
gb|ABN06098.1| Pre-mRNA processing ribonucleoprotein, binding re...   437   e-120
ref|NP_001132587.1| hypothetical protein [Zea mays] gi|194694828...   435   e-120

>emb|CBI32131.3| unnamed protein product [Vitis vinifera]
          Length = 523

 Score =  453 bits (1165), Expect = e-125
 Identities = 234/276 (84%), Positives = 247/276 (89%), Gaps = 1/276 (0%)
 Frame = +3

Query: 54  LNYDDLDSVSKLQKTQRYVDIMQKVDDALQKGN-MSNQGLVLEDDPEYQLIVDCNALSVD 230
           LNYDDLDSVSKLQKTQRY+DIMQKV+DAL+KG+ MSN G+VLEDDPEYQLIVDCNALSVD
Sbjct: 85  LNYDDLDSVSKLQKTQRYIDIMQKVEDALEKGSDMSNHGIVLEDDPEYQLIVDCNALSVD 144

Query: 231 IENEIVIVHNFVRDNYRLKFPELESLVHHPIDYARVVKKIGNETDLTLVDLEGLLPSAII 410
           IENEIVI+HNF+RDNYRLKFPELESLVHHPIDYARVVKKIGNE DLTLVDLEGLLPSAII
Sbjct: 145 IENEIVIIHNFIRDNYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAII 204

Query: 411 MVVSVTASTTSGKPLPEENLKKTXXXXXXXXXXXXXXXXXXXFVESRMGYISPNLSAIVG 590
           MVVSVTASTTSGKPLPEENLKKT                   FVESRMGYI+PNLSAIVG
Sbjct: 205 MVVSVTASTTSGKPLPEENLKKTVDACDRALALDLAKKKVLDFVESRMGYIAPNLSAIVG 264

Query: 591 SAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKTLAGFSTASSHMHVGFLEQTEIFQSTP 770
           SAVAAKLMGTAGGL+ALAKMPACNVQLLGAKKK LAGFSTA+S   VG++EQTEIFQSTP
Sbjct: 265 SAVAAKLMGTAGGLTALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTP 324

Query: 771 PSLRMRACRLLAAKSTLAARVDSIRGDPTGKNGRNL 878
           PSLRMRACRLLAAKSTL+ARVDS RGDPTGK GR L
Sbjct: 325 PSLRMRACRLLAAKSTLSARVDSTRGDPTGKTGRTL 360


>ref|XP_002263653.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Vitis
           vinifera]
          Length = 489

 Score =  453 bits (1165), Expect = e-125
 Identities = 234/276 (84%), Positives = 247/276 (89%), Gaps = 1/276 (0%)
 Frame = +3

Query: 54  LNYDDLDSVSKLQKTQRYVDIMQKVDDALQKGN-MSNQGLVLEDDPEYQLIVDCNALSVD 230
           LNYDDLDSVSKLQKTQRY+DIMQKV+DAL+KG+ MSN G+VLEDDPEYQLIVDCNALSVD
Sbjct: 51  LNYDDLDSVSKLQKTQRYIDIMQKVEDALEKGSDMSNHGIVLEDDPEYQLIVDCNALSVD 110

Query: 231 IENEIVIVHNFVRDNYRLKFPELESLVHHPIDYARVVKKIGNETDLTLVDLEGLLPSAII 410
           IENEIVI+HNF+RDNYRLKFPELESLVHHPIDYARVVKKIGNE DLTLVDLEGLLPSAII
Sbjct: 111 IENEIVIIHNFIRDNYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAII 170

Query: 411 MVVSVTASTTSGKPLPEENLKKTXXXXXXXXXXXXXXXXXXXFVESRMGYISPNLSAIVG 590
           MVVSVTASTTSGKPLPEENLKKT                   FVESRMGYI+PNLSAIVG
Sbjct: 171 MVVSVTASTTSGKPLPEENLKKTVDACDRALALDLAKKKVLDFVESRMGYIAPNLSAIVG 230

Query: 591 SAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKTLAGFSTASSHMHVGFLEQTEIFQSTP 770
           SAVAAKLMGTAGGL+ALAKMPACNVQLLGAKKK LAGFSTA+S   VG++EQTEIFQSTP
Sbjct: 231 SAVAAKLMGTAGGLTALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTP 290

Query: 771 PSLRMRACRLLAAKSTLAARVDSIRGDPTGKNGRNL 878
           PSLRMRACRLLAAKSTL+ARVDS RGDPTGK GR L
Sbjct: 291 PSLRMRACRLLAAKSTLSARVDSTRGDPTGKTGRTL 326


>ref|XP_003622426.1| U4/U6 small nuclear ribonucleoprotein Prp31 [Medicago truncatula]
           gi|355497441|gb|AES78644.1| U4/U6 small nuclear
           ribonucleoprotein Prp31 [Medicago truncatula]
          Length = 438

 Score =  437 bits (1125), Expect = e-120
 Identities = 224/275 (81%), Positives = 244/275 (88%)
 Frame = +3

Query: 54  LNYDDLDSVSKLQKTQRYVDIMQKVDDALQKGNMSNQGLVLEDDPEYQLIVDCNALSVDI 233
           LNYDDLDSVSKLQ+TQRYVD+MQKV++AL+KG+  +QGL LEDDPEYQLIV+CNALSVDI
Sbjct: 47  LNYDDLDSVSKLQQTQRYVDVMQKVEEALKKGSDVSQGLDLEDDPEYQLIVECNALSVDI 106

Query: 234 ENEIVIVHNFVRDNYRLKFPELESLVHHPIDYARVVKKIGNETDLTLVDLEGLLPSAIIM 413
           ENEIVI+HNF+RD YRLKFPELESLVHHPIDYARVVKKIGNE DLTLVDLEGLLPSAIIM
Sbjct: 107 ENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIM 166

Query: 414 VVSVTASTTSGKPLPEENLKKTXXXXXXXXXXXXXXXXXXXFVESRMGYISPNLSAIVGS 593
           VVSVTASTT+GKPLPEE L KT                   FVESRMGYI+PN+SAIVGS
Sbjct: 167 VVSVTASTTTGKPLPEEVLSKTIEACDRALALDSAKKKVLDFVESRMGYIAPNVSAIVGS 226

Query: 594 AVAAKLMGTAGGLSALAKMPACNVQLLGAKKKTLAGFSTASSHMHVGFLEQTEIFQSTPP 773
           AVAAKLMGTAGGLSALAKMPACNVQLLGAKKK LAGFSTA+S  HVG++EQTEIFQ+TPP
Sbjct: 227 AVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFHVGYIEQTEIFQTTPP 286

Query: 774 SLRMRACRLLAAKSTLAARVDSIRGDPTGKNGRNL 878
           S RMRACRL+AAKSTLAARVDSIRGDP+GK GR+L
Sbjct: 287 SFRMRACRLVAAKSTLAARVDSIRGDPSGKTGRSL 321


>gb|ABN06098.1| Pre-mRNA processing ribonucleoprotein, binding region; NOSIC
           [Medicago truncatula]
          Length = 484

 Score =  437 bits (1125), Expect = e-120
 Identities = 224/275 (81%), Positives = 244/275 (88%)
 Frame = +3

Query: 54  LNYDDLDSVSKLQKTQRYVDIMQKVDDALQKGNMSNQGLVLEDDPEYQLIVDCNALSVDI 233
           LNYDDLDSVSKLQ+TQRYVD+MQKV++AL+KG+  +QGL LEDDPEYQLIV+CNALSVDI
Sbjct: 47  LNYDDLDSVSKLQQTQRYVDVMQKVEEALKKGSDVSQGLDLEDDPEYQLIVECNALSVDI 106

Query: 234 ENEIVIVHNFVRDNYRLKFPELESLVHHPIDYARVVKKIGNETDLTLVDLEGLLPSAIIM 413
           ENEIVI+HNF+RD YRLKFPELESLVHHPIDYARVVKKIGNE DLTLVDLEGLLPSAIIM
Sbjct: 107 ENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIM 166

Query: 414 VVSVTASTTSGKPLPEENLKKTXXXXXXXXXXXXXXXXXXXFVESRMGYISPNLSAIVGS 593
           VVSVTASTT+GKPLPEE L KT                   FVESRMGYI+PN+SAIVGS
Sbjct: 167 VVSVTASTTTGKPLPEEVLSKTIEACDRALALDSAKKKVLDFVESRMGYIAPNVSAIVGS 226

Query: 594 AVAAKLMGTAGGLSALAKMPACNVQLLGAKKKTLAGFSTASSHMHVGFLEQTEIFQSTPP 773
           AVAAKLMGTAGGLSALAKMPACNVQLLGAKKK LAGFSTA+S  HVG++EQTEIFQ+TPP
Sbjct: 227 AVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFHVGYIEQTEIFQTTPP 286

Query: 774 SLRMRACRLLAAKSTLAARVDSIRGDPTGKNGRNL 878
           S RMRACRL+AAKSTLAARVDSIRGDP+GK GR+L
Sbjct: 287 SFRMRACRLVAAKSTLAARVDSIRGDPSGKTGRSL 321


>ref|NP_001132587.1| hypothetical protein [Zea mays] gi|194694828|gb|ACF81498.1| unknown
           [Zea mays] gi|414585941|tpg|DAA36512.1| TPA:
           hypothetical protein ZEAMMB73_628259 [Zea mays]
           gi|414585942|tpg|DAA36513.1| TPA: hypothetical protein
           ZEAMMB73_628259 [Zea mays]
          Length = 485

 Score =  435 bits (1119), Expect = e-120
 Identities = 224/277 (80%), Positives = 243/277 (87%), Gaps = 1/277 (0%)
 Frame = +3

Query: 51  TLNYDDLDSVSKLQKTQRYVDIMQKVDDALQKG-NMSNQGLVLEDDPEYQLIVDCNALSV 227
           +LNYDDLDSVSKLQKTQRY DIMQKV++ALQKG + SNQG +LE+DPEYQLIVDCNALSV
Sbjct: 45  SLNYDDLDSVSKLQKTQRYNDIMQKVENALQKGTDFSNQGSILEEDPEYQLIVDCNALSV 104

Query: 228 DIENEIVIVHNFVRDNYRLKFPELESLVHHPIDYARVVKKIGNETDLTLVDLEGLLPSAI 407
           DIENEI+I+HNF+RD YRLKFPELESLVHHPIDYARVVKKIGNE DLTLVDLEGLLPSAI
Sbjct: 105 DIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAI 164

Query: 408 IMVVSVTASTTSGKPLPEENLKKTXXXXXXXXXXXXXXXXXXXFVESRMGYISPNLSAIV 587
           IMVVSVTASTTSGKPL E+NL+KT                   FVESRMGYI+PNLSAIV
Sbjct: 165 IMVVSVTASTTSGKPLSEDNLEKTTEACDRALTLDASKKKVLDFVESRMGYIAPNLSAIV 224

Query: 588 GSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKTLAGFSTASSHMHVGFLEQTEIFQST 767
           GSAVA+KLMGTAGGL ALAKMPACNVQLLGAK+K LAGFSTA+S   VG+LEQTE+FQST
Sbjct: 225 GSAVASKLMGTAGGLGALAKMPACNVQLLGAKRKNLAGFSTATSQFRVGYLEQTEVFQST 284

Query: 768 PPSLRMRACRLLAAKSTLAARVDSIRGDPTGKNGRNL 878
           PP LR RACRL+AAKSTLAAR+DSIRGDPTGK GRNL
Sbjct: 285 PPPLRTRACRLIAAKSTLAARIDSIRGDPTGKAGRNL 321