BLASTX nr result

ID: Coptis23_contig00008646 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008646
         (853 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263305.2| PREDICTED: ethylene-responsive transcription...   104   2e-20
ref|XP_003635449.1| PREDICTED: ethylene-responsive transcription...   103   4e-20
gb|ADC94856.1| DRE transcription factor 1 [Vitis pseudoreticulata]    101   2e-19
ref|XP_002285802.1| PREDICTED: ethylene-responsive transcription...    95   2e-17
ref|XP_002307098.1| AP2/ERF domain-containing transcription fact...    87   5e-15

>ref|XP_002263305.2| PREDICTED: ethylene-responsive transcription factor RAP2-4-like,
           partial [Vitis vinifera]
          Length = 290

 Score =  104 bits (260), Expect = 2e-20
 Identities = 78/189 (41%), Positives = 97/189 (51%), Gaps = 13/189 (6%)
 Frame = -3

Query: 530 MATSIDNYTTSSGSTFTDPLTEELMVALYPFIKXXXXXXXXXXXXXXXXXXXXXXXXXXX 351
           MA +ID Y+ SS + F++   EELM AL PF+K                           
Sbjct: 1   MAAAIDIYS-SSRTVFSE--REELMKALEPFMKGASSTSSLTSPYPYPSTSSLSPPSTSS 57

Query: 350 XXXXXXXS----FEPNL--DYCSTSTTPMFSQGFSTYNDQLGLEQTGSIGLNHLTPSXXX 189
                        +PN+  D+CSTSTT +FSQGFS Y DQ+GLEQTGSIGLNH+TP+   
Sbjct: 58  SSLPFFSYPPDSTQPNMYPDFCSTSTTHVFSQGFSGY-DQMGLEQTGSIGLNHITPAQIL 116

Query: 188 XXXXXXXXXXXXI---AAMTAAASFHSQKLNQIQQQKT----ALNFLSPKAIPMKQVGIS 30
                           AA+  A+S  +Q+L+Q QQQ+      LNFL PKAIPMKQVG  
Sbjct: 117 QIQAQIQFQQQQQQRMAAVATASSIQNQRLSQWQQQQQQQQHTLNFLGPKAIPMKQVGTP 176

Query: 29  SNLTKLYRG 3
               KLYRG
Sbjct: 177 PKPAKLYRG 185


>ref|XP_003635449.1| PREDICTED: ethylene-responsive transcription factor RAP2-4-like
           [Vitis vinifera]
          Length = 374

 Score =  103 bits (258), Expect = 4e-20
 Identities = 78/185 (42%), Positives = 95/185 (51%), Gaps = 9/185 (4%)
 Frame = -3

Query: 530 MATSIDNYTTSSGSTFTDPLTEELMVALYPFIKXXXXXXXXXXXXXXXXXXXXXXXXXXX 351
           MA +ID Y+ SS + F++   EELM AL PF+K                           
Sbjct: 1   MAAAIDIYS-SSRTVFSE--REELMKALEPFMKGASSTSSLTSPYPYPSTSSLSPPSTSS 57

Query: 350 XXXXXXXS----FEPNL--DYCSTSTTPMFSQGFSTYNDQLGLEQTGSIGLNHLTPSXXX 189
                        +PN+  D+CSTSTT MFSQGFS Y DQ+GLEQT SIGLNH+TP+   
Sbjct: 58  SSLPFFSYPPDSTQPNMYPDFCSTSTTHMFSQGFSGY-DQMGLEQTRSIGLNHITPAQIL 116

Query: 188 XXXXXXXXXXXXI---AAMTAAASFHSQKLNQIQQQKTALNFLSPKAIPMKQVGISSNLT 18
                           AA+  A+S  +Q+L+Q QQQ   LNFL PKAIPMKQVG      
Sbjct: 117 QIQAQIQFQQQQQQRMAAVATASSIQNQRLSQWQQQHN-LNFLGPKAIPMKQVGTPPKPA 175

Query: 17  KLYRG 3
           KLYRG
Sbjct: 176 KLYRG 180


>gb|ADC94856.1| DRE transcription factor 1 [Vitis pseudoreticulata]
          Length = 379

 Score =  101 bits (251), Expect = 2e-19
 Identities = 77/189 (40%), Positives = 95/189 (50%), Gaps = 13/189 (6%)
 Frame = -3

Query: 530 MATSIDNYTTSSGSTFTDPLTEELMVALYPFIKXXXXXXXXXXXXXXXXXXXXXXXXXXX 351
           MA +ID Y+ SS + F++   EELM AL PF+K                           
Sbjct: 1   MAAAIDIYS-SSRTVFSE--REELMKALEPFMKGASSTSSLTSPYPYPSTSSLSPPSTSS 57

Query: 350 XXXXXXXS----FEPNL--DYCSTSTTPMFSQGFSTYNDQLGLEQTGSIGLNHLTPSXXX 189
                        +PN+   +CSTSTT MFSQGF  Y DQ+GLEQTGSIGLNH+TP+   
Sbjct: 58  SSLPFFSYPPDSTQPNMYPGFCSTSTTHMFSQGFLGY-DQMGLEQTGSIGLNHITPAQIL 116

Query: 188 XXXXXXXXXXXXI---AAMTAAASFHSQKLNQIQQQKT----ALNFLSPKAIPMKQVGIS 30
                           AA+  A+S  +Q+L+Q QQQ+      LNFL PKAIPMKQVG  
Sbjct: 117 QIQAQIQFQQQQQQRMAAVATASSIQNQRLSQWQQQQQQQQHTLNFLGPKAIPMKQVGTP 176

Query: 29  SNLTKLYRG 3
               KLYRG
Sbjct: 177 PKPAKLYRG 185


>ref|XP_002285802.1| PREDICTED: ethylene-responsive transcription factor RAP2-4-like
           isoform 1 [Vitis vinifera]
          Length = 367

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 56/105 (53%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
 Frame = -3

Query: 311 DYCSTSTTPMFSQGFSTYNDQLGLEQTGSIGLNHLTPSXXXXXXXXXXXXXXXI--AAMT 138
           D CSTSTT + SQGFS+++ Q G E +G IGLNHLTPS                   A+ 
Sbjct: 69  DGCSTSTTHVISQGFSSHDLQ-GFEHSGPIGLNHLTPSQIHQIQAQIQLQQHHNHMPAVA 127

Query: 137 AAASFHSQKLNQIQQQKTALNFLSPKAIPMKQVGISSNLTKLYRG 3
           AAASF++Q L Q QQ++ A NFLSPK IPMKQVG+    TKLYRG
Sbjct: 128 AAASFNTQNLPQWQQRQQAPNFLSPKPIPMKQVGVPPKPTKLYRG 172


>ref|XP_002307098.1| AP2/ERF domain-containing transcription factor [Populus
           trichocarpa] gi|222856547|gb|EEE94094.1| AP2/ERF
           domain-containing transcription factor [Populus
           trichocarpa]
          Length = 372

 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 68/181 (37%), Positives = 82/181 (45%), Gaps = 5/181 (2%)
 Frame = -3

Query: 530 MATSIDNYTTSSGSTFTDPLTEELMVALYPFIKXXXXXXXXXXXXXXXXXXXXXXXXXXX 351
           MA +ID Y T+    F+DP  EELM AL PF+K                           
Sbjct: 1   MAAAIDIYNTTV-PVFSDPCREELMKALEPFMKSASPSPTSTYSSPSPSTSSPPFSSHPS 59

Query: 350 XXXXXXXSFE--PNLD--YCSTSTTPMFSQGFSTYNDQLGLEQTGSIGLNHLTPSXXXXX 183
                       PNLD  +CS ++T MFS GF  YN Q+G EQTG IGLNHLTPS     
Sbjct: 60  CFYNNNSLISSYPNLDLSFCSPTSTQMFSNGFLDYN-QMGFEQTGPIGLNHLTPSQILQI 118

Query: 182 XXXXXXXXXXIAAMTAAASFHSQKLNQIQQQKTALNFLSPKAIPMKQVGIS-SNLTKLYR 6
                        M   A+  SQ ++     + A NFL+PK +PMKQ   S    TKLYR
Sbjct: 119 QAKIHFQQQQQQKMENLATTTSQFVH----NQRASNFLAPKPVPMKQSAASPQKPTKLYR 174

Query: 5   G 3
           G
Sbjct: 175 G 175


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