BLASTX nr result

ID: Coptis23_contig00008593 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008593
         (682 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320889.1| predicted protein [Populus trichocarpa] gi|2...    60   5e-07
emb|CBI38687.3| unnamed protein product [Vitis vinifera]               57   3e-06
dbj|BAJ33957.1| unnamed protein product [Thellungiella halophila]      56   8e-06

>ref|XP_002320889.1| predicted protein [Populus trichocarpa] gi|222861662|gb|EEE99204.1|
           predicted protein [Populus trichocarpa]
          Length = 238

 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
 Frame = -2

Query: 675 PRIERRSCPLASDGKSTERDPDNR-VIKSEHEQKPAISFEGSDLRAAPCSD-DXXXXXXX 502
           P  E   C   +   S+E + +N    K E E KP +S E  +      SD D       
Sbjct: 130 PVEEGECCGQGAAVNSSEGESENGDATKGESETKPRLSIEQPEHGLGVLSDEDSSIKVDY 189

Query: 501 XXXXXEADLMNVMDPASSILASPGNWSAFNSDNGLFDQSSSTSQWWEFW 355
                E +LM++++PA   L S  +W + +SD GLFDQSSS  QWW+FW
Sbjct: 190 FELEEEPNLMSMVEPAEGSLTSQEDWGSIDSD-GLFDQSSSGYQWWDFW 237


>emb|CBI38687.3| unnamed protein product [Vitis vinifera]
          Length = 193

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
 Frame = -2

Query: 630 STERDPDNRVIKS-EHEQKPAISFEGSDLRAAPCSDDXXXXXXXXXXXXEA-DLMNVMDP 457
           S E + DNR   + E E KP +S E S+      SDD            E   L+ +++P
Sbjct: 100 SAESEADNRDNGNCESEVKPNLSLERSEHGGGVLSDDDSSIRADYFVMEEEPSLLTMVEP 159

Query: 456 ASSILASPGNWSAFNSDNGLFDQSSSTSQWWEFW 355
               L SP +W +++S+N +FDQSS + QWW+FW
Sbjct: 160 VDGCLTSPEDWGSWDSEN-VFDQSSGSYQWWDFW 192


>dbj|BAJ33957.1| unnamed protein product [Thellungiella halophila]
          Length = 248

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = -2

Query: 477 LMNVMDPASSILASPGNWSAFNSDNGLFDQSSSTSQWWEFW 355
           LMN+++PA S L S  +W  F SD  L DQSSS   WW+FW
Sbjct: 207 LMNIVEPADSCLTSSDDWRGFRSDTNLLDQSSSNYPWWDFW 247


Top