BLASTX nr result

ID: Coptis23_contig00008592 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008592
         (457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269300.1| PREDICTED: light-regulated protein [Vitis vi...    87   1e-15
ref|XP_002299345.1| predicted protein [Populus trichocarpa] gi|1...    82   6e-14
ref|XP_004170126.1| PREDICTED: LOW QUALITY PROTEIN: light-regula...    81   1e-13
gb|AFK49621.1| unknown [Lotus japonicus]                               81   1e-13
ref|XP_002275869.1| PREDICTED: light-regulated protein [Vitis vi...    80   1e-13

>ref|XP_002269300.1| PREDICTED: light-regulated protein [Vitis vinifera]
           gi|296088179|emb|CBI35671.3| unnamed protein product
           [Vitis vinifera]
          Length = 139

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 50/108 (46%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
 Frame = -3

Query: 323 MQAAFCFAQXXXXXXXXXXXTRWLRSP-SKIETILLRRHPASTKVMAIPSENSTVDYTSK 147
           MQAA CF +              L++P SK++T       A++K+   PS   TVDY+S 
Sbjct: 1   MQAALCFPRSTLPLLTPTKPFSSLKNPISKLQTSPFPPLRATSKLQETPS---TVDYSST 57

Query: 146 TSVFPAEACETIGGEACNAEIYPETTLKPEDTSIKGKTTQESVDREYL 3
           TSVFPAEACE +GGEAC+AE+YPE  LK E  +   ++  E VDREYL
Sbjct: 58  TSVFPAEACEVVGGEACDAEMYPEVKLKAEAGNPPARSATEGVDREYL 105


>ref|XP_002299345.1| predicted protein [Populus trichocarpa] gi|118489445|gb|ABK96525.1|
           unknown [Populus trichocarpa x Populus deltoides]
           gi|118489977|gb|ABK96785.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|222846603|gb|EEE84150.1|
           predicted protein [Populus trichocarpa]
          Length = 132

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 39/61 (63%), Positives = 47/61 (77%)
 Frame = -3

Query: 185 IPSENSTVDYTSKTSVFPAEACETIGGEACNAEIYPETTLKPEDTSIKGKTTQESVDREY 6
           + ++ STVDY+S TSVFPAEACETIGGEACN E+YPE  LKP+  S    +T E +DREY
Sbjct: 45  VTNDTSTVDYSSFTSVFPAEACETIGGEACNVEMYPEVKLKPDARSTT-PSTSEQIDREY 103

Query: 5   L 3
           L
Sbjct: 104 L 104


>ref|XP_004170126.1| PREDICTED: LOW QUALITY PROTEIN: light-regulated protein-like
           [Cucumis sativus]
          Length = 137

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 38/65 (58%), Positives = 49/65 (75%)
 Frame = -3

Query: 197 KVMAIPSENSTVDYTSKTSVFPAEACETIGGEACNAEIYPETTLKPEDTSIKGKTTQESV 18
           K  A+  + STVDY+S +SVFPAEAC+T+GGEAC+ E+YPE  LKPE  + KG +  E V
Sbjct: 44  KASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPE--AXKGNSVTEPV 101

Query: 17  DREYL 3
           +REYL
Sbjct: 102 EREYL 106


>gb|AFK49621.1| unknown [Lotus japonicus]
          Length = 140

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 41/81 (50%), Positives = 52/81 (64%)
 Frame = -3

Query: 245 PSKIETILLRRHPASTKVMAIPSENSTVDYTSKTSVFPAEACETIGGEACNAEIYPETTL 66
           P+K+   L      + KV  +  + STVDYTS  SVFP EACETIGG+AC AE+YPE  L
Sbjct: 29  PAKLTGSLAPPRFTAIKVATVNYDTSTVDYTSAFSVFPVEACETIGGDACLAEMYPEVKL 88

Query: 65  KPEDTSIKGKTTQESVDREYL 3
           KPE  +   +   E+V+REYL
Sbjct: 89  KPEARNNTPRDASENVEREYL 109


>ref|XP_002275869.1| PREDICTED: light-regulated protein [Vitis vinifera]
           gi|296082275|emb|CBI21280.3| unnamed protein product
           [Vitis vinifera]
          Length = 138

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 48/107 (44%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
 Frame = -3

Query: 323 MQAAFCFAQXXXXXXXXXXXTRWLRS-PSKIETILLRRHPASTKVMAIPSENSTVDYTSK 147
           MQAA CFA                 S P K+ T L  R P   K  A   ++STVDY S 
Sbjct: 1   MQAALCFAPTLLPLTPSRNFATPASSSPPKLATSLTSRRPP-IKAAAAAYDSSTVDYNSM 59

Query: 146 TSVFPAEACETIGGEACNAEIYPETTLKPEDTSIKGKTTQESVDREY 6
           TSVFPAEAC+ IGGEAC A+ YPE  LK E  +   +T  E  +R+Y
Sbjct: 60  TSVFPAEACDVIGGEACLADCYPEVRLKQEARNRAARTASEVTERDY 106


Top