BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008588
         (778 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309447.1| predicted protein [Populus trichocarpa] gi|1...   150   4e-34
ref|XP_002516178.1| RING-H2 finger protein ATL3J, putative [Rici...   142   8e-32
ref|XP_002874020.1| zinc finger family protein [Arabidopsis lyra...   138   2e-30
ref|NP_568404.1| RING/U-box domain-containing protein [Arabidops...   135   1e-29
ref|XP_002324208.1| predicted protein [Populus trichocarpa] gi|2...   130   4e-28

>ref|XP_002309447.1| predicted protein [Populus trichocarpa] gi|118483893|gb|ABK93837.1|
           unknown [Populus trichocarpa]
           gi|222855423|gb|EEE92970.1| predicted protein [Populus
           trichocarpa]
          Length = 168

 Score =  150 bits (378), Expect = 4e-34
 Identities = 82/174 (47%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
 Frame = -2

Query: 699 MGFSVEYSGLVLTHXXXXXXXXXXXLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 520
           MGF VE SGL++TH           LR    W  R                      SS 
Sbjct: 1   MGFFVEESGLIVTHLLYKAALVLAVLRWALAWALRFKNRTHLASPSNDSLRRSHPVPSS- 59

Query: 519 LTAQMIRETLDVVTYGDIMHNLPGACDTCAVCLNELKKNDRVRELRNCCHVFHIKCIDRW 340
              Q IR+ L + T+GD+   +PG CDTCAVCL++L+  D VRELRNCCHVFH  CIDRW
Sbjct: 60  ---QQIRDGLILTTFGDVTERMPGVCDTCAVCLSQLRDQDEVRELRNCCHVFHRDCIDRW 116

Query: 339 LDHG-----DQKNCPLCRAPLLVTSCGSGLDGGWARSEPSWAVERLLYLFGDDL 193
           +DH      +   CPLCRAPLL TS          R+EPSWAVER+LYLFGDDL
Sbjct: 117 VDHDHEHDENHNTCPLCRAPLLTTSQSLAR----TRAEPSWAVERILYLFGDDL 166


>ref|XP_002516178.1| RING-H2 finger protein ATL3J, putative [Ricinus communis]
           gi|223544664|gb|EEF46180.1| RING-H2 finger protein
           ATL3J, putative [Ricinus communis]
          Length = 177

 Score =  142 bits (358), Expect = 8e-32
 Identities = 81/177 (45%), Positives = 100/177 (56%), Gaps = 8/177 (4%)
 Frame = -2

Query: 699 MGFSVEYSGLVLTHXXXXXXXXXXXLRCVFCWVTR--SMGFXXXXXXXXXXSTVPQVGLS 526
           MGF VE S +++TH            R    W  R  S  +           ++ Q   S
Sbjct: 1   MGFFVEDSDVIVTHLLYKAAVILAVARWALSWALRFRSRTYLSPSSSSSSNDSLHQ---S 57

Query: 525 SGL-TAQMIRETLDVVTYGDIMHNLPGACDTCAVCLNELKKNDRVRELRNCCHVFHIKCI 349
             L ++Q IR+ L + T+GDI   + GACDTCAVCL +L + D VRELRNCCHVFH +CI
Sbjct: 58  CALPSSQQIRDGLILTTFGDITDRISGACDTCAVCLGQLSELDEVRELRNCCHVFHKECI 117

Query: 348 DRWLDH-----GDQKNCPLCRAPLLVTSCGSGLDGGWARSEPSWAVERLLYLFGDDL 193
           DRW+DH      + K CPLCRAPLL  S          + EPSWAVER+LYLFGDDL
Sbjct: 118 DRWVDHDHDHDDNHKTCPLCRAPLLTASQSLAWINN-NKCEPSWAVERILYLFGDDL 173


>ref|XP_002874020.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319857|gb|EFH50279.1| zinc finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 178

 Score =  138 bits (347), Expect = 2e-30
 Identities = 82/188 (43%), Positives = 103/188 (54%), Gaps = 18/188 (9%)
 Frame = -2

Query: 699 MGFSVEYSGLVLTHXXXXXXXXXXXLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 520
           M F +E+SGL++T            LR +  W+ R              S+     +S  
Sbjct: 1   MSFFIEHSGLIVTQLLYKMAVLITILRWILAWILRYRS------RSRSTSSSSSPSVSPS 54

Query: 519 LTAQMIRETLDVVTYGDIMHNLPGAC-DTCAVCLNELKKNDRVRELRNCCHVFHIKCIDR 343
           +++Q I+E+L V T+ D     P    DTCAVCL +L+  D VRELRNC H+FH +CIDR
Sbjct: 55  ISSQTIKESLSVTTFRDAAERSPAMINDTCAVCLGDLEDGDEVRELRNCSHMFHRECIDR 114

Query: 342 WLDH----GDQKN---------CPLCRAPLL---VTSCGSGLDGGW-ARSEPSWAVERLL 214
           WLD+    GD  N         CPLCR PLL    TSCG      W A++EPSWAVERLL
Sbjct: 115 WLDYECCGGDDNNEAEEDNHRTCPLCRTPLLAANTTSCGD-----WPAKNEPSWAVERLL 169

Query: 213 YLFGDDLH 190
           YLFGDDLH
Sbjct: 170 YLFGDDLH 177


>ref|NP_568404.1| RING/U-box domain-containing protein [Arabidopsis thaliana]
           gi|16209696|gb|AAL14405.1| AT5g20880/F22D1_50
           [Arabidopsis thaliana] gi|23463037|gb|AAN33188.1|
           At5g20880/F22D1_50 [Arabidopsis thaliana]
           gi|26451529|dbj|BAC42862.1| unknown protein [Arabidopsis
           thaliana] gi|332005517|gb|AED92900.1| RING/U-box
           domain-containing protein [Arabidopsis thaliana]
          Length = 176

 Score =  135 bits (339), Expect = 1e-29
 Identities = 81/188 (43%), Positives = 100/188 (53%), Gaps = 18/188 (9%)
 Frame = -2

Query: 699 MGFSVEYSGLVLTHXXXXXXXXXXXLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 520
           M F +E SGL++T            LR +  W+ R              ST         
Sbjct: 1   MSFFIEDSGLIVTQLLYKMAVLITVLRWILAWILRYRS--------RSRSTSSSTSACPS 52

Query: 519 LTAQMIRETLDVVTYGDIMHNLPGAC-DTCAVCLNELKKNDRVRELRNCCHVFHIKCIDR 343
           +++Q I+E+L V T+ D     P    DTCAVCL +L+  D VRELRNC H+FH +CIDR
Sbjct: 53  ISSQAIKESLSVTTFRDAAERSPAMINDTCAVCLGDLEDGDEVRELRNCSHMFHRECIDR 112

Query: 342 WLDH----GDQKN---------CPLCRAPLL---VTSCGSGLDGGW-ARSEPSWAVERLL 214
           WLD+    GD+ N         CPLCR PLL    TSCG      W  ++EPSWAVERLL
Sbjct: 113 WLDYECCGGDENNEGEEDNHRTCPLCRTPLLAANTTSCGD-----WPTKNEPSWAVERLL 167

Query: 213 YLFGDDLH 190
           YLFGDDLH
Sbjct: 168 YLFGDDLH 175


>ref|XP_002324208.1| predicted protein [Populus trichocarpa] gi|222865642|gb|EEF02773.1|
           predicted protein [Populus trichocarpa]
          Length = 174

 Score =  130 bits (326), Expect = 4e-28
 Identities = 61/115 (53%), Positives = 75/115 (65%), Gaps = 11/115 (9%)
 Frame = -2

Query: 504 IRETLDVVTYGDIMHNLPGACDTCAVCLNELKKNDRVRELRNCCHVFHIKCIDRWLDHG- 328
           + + L   T+ D++  +PG CDTCAVCL++L+  D VRELRNC HVFH +CIDRW+DH  
Sbjct: 62  VMDGLISTTFNDVIERVPGVCDTCAVCLSQLRDQDEVRELRNCGHVFHKECIDRWVDHDH 121

Query: 327 ----------DQKNCPLCRAPLLVTSCGSGLDGGWARSEPSWAVERLLYLFGDDL 193
                     +   CPLCRAPL  TS        W R+EPSWAVER+LYLFGDDL
Sbjct: 122 DHDHDHDHDENHNTCPLCRAPLPTTSRSL----AWTRTEPSWAVERILYLFGDDL 172