BLASTX nr result

ID: Coptis23_contig00008482 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008482
         (1703 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262981.1| PREDICTED: short-chain dehydrogenase TIC 32,...   412   e-112
ref|XP_002299444.1| predicted protein [Populus trichocarpa] gi|2...   409   e-111
ref|XP_002518876.1| short-chain dehydrogenase, putative [Ricinus...   404   e-110
ref|XP_003530511.1| PREDICTED: WW domain-containing oxidoreducta...   403   e-110
ref|XP_002303676.1| predicted protein [Populus trichocarpa] gi|2...   390   e-106

>ref|XP_002262981.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis
            vinifera] gi|297742402|emb|CBI34551.3| unnamed protein
            product [Vitis vinifera]
          Length = 336

 Score =  412 bits (1060), Expect = e-112
 Identities = 217/317 (68%), Positives = 249/317 (78%)
 Frame = -2

Query: 1258 YLIGSVGPSGFSSKSTAEQVTEVFPDLPXXXXXXXXXXXXXXXXXARVLAKRGARLILPA 1079
            YL+GS G SG+ SKSTAE+VTE  PDL                  ARVLAKRGARL+LPA
Sbjct: 7    YLLGSFGASGYGSKSTAEEVTENCPDLGSVTAVITGATSGIGAETARVLAKRGARLVLPA 66

Query: 1078 RTVXXXXXXXXXXXXEFPDTEIIVMTLDLSSLTSVRNFVTDFESXXXXXXXXXXNAGKFS 899
            R++            EFP++EI+VM LDLSSL SVR FV++FES          NAGKF+
Sbjct: 67   RSLKAAEEAKARIVAEFPNSEIVVMALDLSSLDSVRCFVSEFESLDLPLNLLINNAGKFT 126

Query: 898  HEYGISEDGIEMTFATNYLGHFLLTKMLLKKMIETAQRTGYQGRIVNVSSAIHNWFSGDG 719
            HE+ ISEDGIEMTFATNYLGHFLLTK+LL KMIETA++TG QGRIVNVSS IH+WFSGD 
Sbjct: 127  HEHAISEDGIEMTFATNYLGHFLLTKLLLNKMIETAKKTGVQGRIVNVSSTIHSWFSGDV 186

Query: 718  LRYLEQINRKKSFYDPTRAYALSKLANVLHTKELARRLKKMEANVTVNCVHPGVVKTRLT 539
            +RYL  I R KS YD TRAYA+SKLANVLHTKELA+RLK+M+ANVTVNCVHPG+V+TRLT
Sbjct: 187  IRYLGLITRNKSQYDATRAYAVSKLANVLHTKELAQRLKQMDANVTVNCVHPGIVRTRLT 246

Query: 538  REREGFLTDLIFFLTSMLLKTIPQAAATTCYVASHPQLLGVSGKYFADCNEASSSQLGSN 359
            RE EG +TDLIFFLTS  LKTIPQAAATTCYVA+HP+L+ VSGKYFADCNEA +S+LGSN
Sbjct: 247  RETEGIVTDLIFFLTSKFLKTIPQAAATTCYVATHPRLVNVSGKYFADCNEAWTSKLGSN 306

Query: 358  LKEASRLWIASEAMTAK 308
             +EASRLW ASE MTA+
Sbjct: 307  SQEASRLWSASEIMTAR 323


>ref|XP_002299444.1| predicted protein [Populus trichocarpa] gi|222846702|gb|EEE84249.1|
            predicted protein [Populus trichocarpa]
          Length = 332

 Score =  409 bits (1050), Expect = e-111
 Identities = 218/318 (68%), Positives = 249/318 (78%), Gaps = 1/318 (0%)
 Frame = -2

Query: 1258 YLIGSVGPSGFSSKSTAEQVTEVFPDLPXXXXXXXXXXXXXXXXXARVLAKRGARLILPA 1079
            YL GS G SG+ SKST EQVTE   DL                  ARVLAKRGARL+LPA
Sbjct: 7    YLTGSAGASGYGSKSTGEQVTENCGDLHSITAIITGATSGIGAETARVLAKRGARLVLPA 66

Query: 1078 RTVXXXXXXXXXXXXEFPDTEIIVMTLDLSSLTSVRNFVTDFESXXXXXXXXXXNAGKFS 899
            R++            E PDTEIIVM LDLSSL SVRNFV++FES          NAGKF+
Sbjct: 67   RSLKAAEDAKARIISENPDTEIIVMGLDLSSLNSVRNFVSEFESFDLPLNLLINNAGKFA 126

Query: 898  HEYGISEDGIEMTFATNYLGHFLLTKMLLKKMIETAQRTGYQGRIVNVSSAIHNWFSGDG 719
            HE+ ISEDGIEMTFATN+LGHFLLTK+LLKKMIETA+ TG QGRIVNVSS+I+NWFSGD 
Sbjct: 127  HEHAISEDGIEMTFATNFLGHFLLTKLLLKKMIETAKTTGIQGRIVNVSSSIYNWFSGDP 186

Query: 718  LRYLEQINRKK-SFYDPTRAYALSKLANVLHTKELARRLKKMEANVTVNCVHPGVVKTRL 542
            +RYL QI+R K   +DPTRAYALSKLANVLHTKELA+RLK+MEANVTVNCVHPGVV+TRL
Sbjct: 187  IRYLGQISRNKLRDFDPTRAYALSKLANVLHTKELAQRLKQMEANVTVNCVHPGVVRTRL 246

Query: 541  TREREGFLTDLIFFLTSMLLKTIPQAAATTCYVASHPQLLGVSGKYFADCNEASSSQLGS 362
            TREREG +TD+ FFLTS LLKTIPQAAATTCYVA+HP+L+ V+GKYF+DCNEAS+S+LGS
Sbjct: 247  TREREGIVTDMAFFLTSKLLKTIPQAAATTCYVATHPRLVNVTGKYFSDCNEASTSKLGS 306

Query: 361  NLKEASRLWIASEAMTAK 308
            N  EA+RLW ASE M ++
Sbjct: 307  NSTEAARLWTASEIMVSR 324


>ref|XP_002518876.1| short-chain dehydrogenase, putative [Ricinus communis]
            gi|223541863|gb|EEF43409.1| short-chain dehydrogenase,
            putative [Ricinus communis]
          Length = 339

 Score =  404 bits (1038), Expect = e-110
 Identities = 212/318 (66%), Positives = 249/318 (78%), Gaps = 1/318 (0%)
 Frame = -2

Query: 1258 YLIGSVGPSGFSSKSTAEQVTEVFPDLPXXXXXXXXXXXXXXXXXARVLAKRGARLILPA 1079
            YLIGS GPS F SKSTAEQVTE F DL                  ARVLAK+GARL++PA
Sbjct: 7    YLIGSAGPSNFGSKSTAEQVTE-FSDLRSVTAIITGATSGIGAETARVLAKQGARLVIPA 65

Query: 1078 RTVXXXXXXXXXXXXEF-PDTEIIVMTLDLSSLTSVRNFVTDFESXXXXXXXXXXNAGKF 902
            R++            +F P++EII+M LDLSSL SV+NFV +FES          NAG F
Sbjct: 66   RSMKAAEEAKARIMSDFKPESEIIIMALDLSSLNSVKNFVAEFESFNLPLNLLINNAGTF 125

Query: 901  SHEYGISEDGIEMTFATNYLGHFLLTKMLLKKMIETAQRTGYQGRIVNVSSAIHNWFSGD 722
            +HE+ ISEDGIEMTFATNYLGHFLLTK+LLKKMIETA+ TG QGRIVNVSS+IH+WFSGD
Sbjct: 126  AHEHAISEDGIEMTFATNYLGHFLLTKLLLKKMIETAKETGVQGRIVNVSSSIHSWFSGD 185

Query: 721  GLRYLEQINRKKSFYDPTRAYALSKLANVLHTKELARRLKKMEANVTVNCVHPGVVKTRL 542
             +RYL +I+R K  YD TRAYALSKLAN+LHTKELA+RLK+MEANVTVNCVHPG+V+TRL
Sbjct: 186  MIRYLGEISRNKCHYDATRAYALSKLANILHTKELAQRLKQMEANVTVNCVHPGIVRTRL 245

Query: 541  TREREGFLTDLIFFLTSMLLKTIPQAAATTCYVASHPQLLGVSGKYFADCNEASSSQLGS 362
            TREREG LTD++FF+ S LLKTIPQAAATTC+VA+ P+LL VSGKYFADCNEAS+S+LGS
Sbjct: 246  TREREGILTDMVFFMASKLLKTIPQAAATTCFVATSPRLLNVSGKYFADCNEASASKLGS 305

Query: 361  NLKEASRLWIASEAMTAK 308
            +  EAS+LW ASE M ++
Sbjct: 306  SSTEASKLWSASEIMVSR 323


>ref|XP_003530511.1| PREDICTED: WW domain-containing oxidoreductase-like isoform 1
            [Glycine max]
          Length = 337

 Score =  403 bits (1036), Expect = e-110
 Identities = 210/317 (66%), Positives = 240/317 (75%)
 Frame = -2

Query: 1258 YLIGSVGPSGFSSKSTAEQVTEVFPDLPXXXXXXXXXXXXXXXXXARVLAKRGARLILPA 1079
            YL+GS GPSGF SK+TAEQVTE   DL                  ARVLAKRGARL+LPA
Sbjct: 7    YLLGSAGPSGFGSKTTAEQVTENHADLRSITAIITGATSGIGTETARVLAKRGARLVLPA 66

Query: 1078 RTVXXXXXXXXXXXXEFPDTEIIVMTLDLSSLTSVRNFVTDFESXXXXXXXXXXNAGKFS 899
            R++            E PD+EIIVM LDLSSL SV NFV  F S          NAGKF+
Sbjct: 67   RSMKAAEDAKARIVSECPDSEIIVMALDLSSLNSVTNFVAHFHSLGLPLHLLINNAGKFA 126

Query: 898  HEYGISEDGIEMTFATNYLGHFLLTKMLLKKMIETAQRTGYQGRIVNVSSAIHNWFSGDG 719
            HE+ ISEDG+EMTFATNYLGHF++T +L+KKM+ETA+ TG QGRIVNVSS+IH WFSGD 
Sbjct: 127  HEHAISEDGVEMTFATNYLGHFVMTNLLVKKMVETAKETGVQGRIVNVSSSIHGWFSGDA 186

Query: 718  LRYLEQINRKKSFYDPTRAYALSKLANVLHTKELARRLKKMEANVTVNCVHPGVVKTRLT 539
            + YL  I+R K  YD TRAYALSKLANV HTKELARRL++M ANVTVNCVHPG+V+TRLT
Sbjct: 187  ISYLALISRNKRHYDATRAYALSKLANVFHTKELARRLQQMGANVTVNCVHPGIVRTRLT 246

Query: 538  REREGFLTDLIFFLTSMLLKTIPQAAATTCYVASHPQLLGVSGKYFADCNEASSSQLGSN 359
            REREG LTDL+FFL S LLKTIPQAAATTCYVA+HP+LL VSGKYFADCNE S+S+LGSN
Sbjct: 247  REREGLLTDLVFFLASKLLKTIPQAAATTCYVATHPRLLNVSGKYFADCNETSTSKLGSN 306

Query: 358  LKEASRLWIASEAMTAK 308
              EA+RLW ASE M ++
Sbjct: 307  STEAARLWAASEFMISR 323


>ref|XP_002303676.1| predicted protein [Populus trichocarpa] gi|222841108|gb|EEE78655.1|
            predicted protein [Populus trichocarpa]
          Length = 322

 Score =  390 bits (1002), Expect = e-106
 Identities = 212/315 (67%), Positives = 241/315 (76%), Gaps = 1/315 (0%)
 Frame = -2

Query: 1258 YLIGSVGPSGFSSKSTAEQVTEVFPDLPXXXXXXXXXXXXXXXXXARVLAKRGARLILPA 1079
            YL+GS G SG+ SKSTAEQVTE   DL                  ARVLAKRGARL+LPA
Sbjct: 7    YLVGSAGASGYGSKSTAEQVTENCCDLHSITAIITGATSGIGAETARVLAKRGARLVLPA 66

Query: 1078 RTVXXXXXXXXXXXXEFPDTEIIVMTLDLSSLTSVRNFVTDFESXXXXXXXXXXNAGKFS 899
            R +            E PD +IIVM LDLSSL SVRNFV++FES          NAG+F+
Sbjct: 67   RNLKGAEDAKARILSENPDADIIVMGLDLSSLNSVRNFVSEFESLNLPLNLLINNAGRFA 126

Query: 898  HEYGISEDGIEMTFATNYLGHFLLTKMLLKKMIETAQRTGYQGRIVNVSSAIHNWFSGDG 719
             E  ISEDGIEMTFATNYLGHFLLTK+LLKKMIETA+ T  QGRIVNVSS+I+NWFSGD 
Sbjct: 127  LEPAISEDGIEMTFATNYLGHFLLTKLLLKKMIETAKTTSLQGRIVNVSSSIYNWFSGDM 186

Query: 718  LRYLEQINRKKSF-YDPTRAYALSKLANVLHTKELARRLKKMEANVTVNCVHPGVVKTRL 542
            +RYL +I+R K   +DPTRAYALSKLA VLHTKE+A+RLK+MEANVTVNCVHPGVV+TRL
Sbjct: 187  IRYLCEISRNKLCDFDPTRAYALSKLAIVLHTKEVAQRLKQMEANVTVNCVHPGVVRTRL 246

Query: 541  TREREGFLTDLIFFLTSMLLKTIPQAAATTCYVASHPQLLGVSGKYFADCNEASSSQLGS 362
            TREREG  TD+ FFLTS LLKTIPQAAATTCYVA+HP L+ V+GKYF+DCNEAS+S+LGS
Sbjct: 247  TREREGMATDIAFFLTSKLLKTIPQAAATTCYVATHPTLVNVTGKYFSDCNEASTSKLGS 306

Query: 361  NLKEASRLWIASEAM 317
            N  EA+RLW ASE M
Sbjct: 307  NSTEAARLWTASEIM 321


Top