BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008479
         (451 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...   114   8e-24
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   105   3e-21
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...    99   4e-19
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...    99   4e-19
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...    99   5e-19

>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score =  114 bits (285), Expect = 8e-24
 Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
 Frame = +1

Query: 1   LLLEAAGRTGPHGRNLHPRSLSSRQQEAXXXXXXXXXXXX-----LGHDTLKPSRSNVPL 165
           LLLEAAGRTG  GRN H    S R++E                   G+ + KPS S VPL
Sbjct: 7   LLLEAAGRTGTAGRNRHSLPPSRRRREGSYSDDGSDSKDDDSDEDRGYSSRKPSGSQVPL 66

Query: 166 KKRLDPIEKDDDNGSLSDGCNYXXXXXXXXXXXXXXXXXLYKDDYDREQLAQLTELQREM 345
           KKRLDP E+DDD+GS  +G +                  LYK++ DR+QLAQLTEL+REM
Sbjct: 67  KKRLDPTERDDDHGSPEEGDDDGSDHEGDSSDDSDVGSDLYKNEDDRQQLAQLTELEREM 126

Query: 346 ILSDRAQKRDEQRLRDRVRPKQRGKKSQVLKGTP 447
           IL+DRA K+ +++L +++R K+  +K+Q  K +P
Sbjct: 127 ILTDRATKKTDKKLHEKLRSKRGKEKTQSRKESP 160


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus]
          Length = 660

 Score =  105 bits (263), Expect = 3e-21
 Identities = 69/157 (43%), Positives = 86/157 (54%), Gaps = 8/157 (5%)
 Frame = +1

Query: 1   LLLEAAGRTGPHGRNLHPRSLSSRQQE-----AXXXXXXXXXXXXLGHDTLKPSRSNVPL 165
           LLLEAAGRT   GRN H    S RQ+E     A             G+ + KPS S VPL
Sbjct: 7   LLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPSGSQVPL 66

Query: 166 KKRLDPIEKDDDNGSLSDGCN--YXXXXXXXXXXXXXXXXXLYKDDYDREQLAQLTELQR 339
           KKRLDP E+DDD GS  +G +                    LYKDD DR +LA ++ELQR
Sbjct: 67  KKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAGMSELQR 126

Query: 340 EMILSDRAQKRDEQRLRDRVRPK-QRGKKSQVLKGTP 447
           EMILSDRA K++++ L + +R K  +GK +   K TP
Sbjct: 127 EMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETP 163


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
 Frame = +1

Query: 1   LLLEAAGRTGPHGRNLHPRSLSSRQQEAXXXXXXXXXXXXLGHDTL-----KPSRSNVPL 165
           LLLEAAGRTG  GRN H    S R+ +                D L     KPS S VPL
Sbjct: 7   LLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSGSQVPL 66

Query: 166 KKRLDPIEKDDDNGSLSDGCNYXXXXXXXXXXXXXXXXX-LYKDDYDREQLAQLTELQRE 342
           KKRLDP E+DDD GS  +  +                   LYKD+ DR +L+++TELQRE
Sbjct: 67  KKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEMTELQRE 126

Query: 343 MILSDRAQKRDEQRLRDRVRPK-QRGKKSQVLKGTP 447
           MILSDRA K+D++ L  ++  K ++GK +   K +P
Sbjct: 127 MILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSP 162


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
 Frame = +1

Query: 1   LLLEAAGRTGPHGRNLHPRSLSSRQQEAXXXXXXXXXXXX-----LGHDTLKPSRSNVPL 165
           LLLEAAGRTG  GRN +    S R++E                   G+ + KPS S VPL
Sbjct: 7   LLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPSGSQVPL 66

Query: 166 KKRLDPIEKDDDNGSLSDGC--NYXXXXXXXXXXXXXXXXXLYKDDYDREQLAQLTELQR 339
           KKRLDP E+DDD GS  +G   +                  LYK++ DR +LAQ++EL+R
Sbjct: 67  KKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQMSELER 126

Query: 340 EMILSDRAQKRDEQRLRDRVRPKQRGKKS 426
           EMILS+RA K+ ++ L +R+R K+  +++
Sbjct: 127 EMILSERADKKGDKNLTERIRSKRESERT 155


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
 Frame = +1

Query: 1   LLLEAAGRTGPHGRNLHPRSLSSRQQEAXXXXXXXXXXXXLGHDTL-----KPSRSNVPL 165
           LLLEAAGRTG  GRN H    S R+ +                D L     KPS S VPL
Sbjct: 7   LLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPSGSQVPL 66

Query: 166 KKRLDPIEKDDDNGSLSDGCNYXXXXXXXXXXXXXXXXX-LYKDDYDREQLAQLTELQRE 342
           KKRLDP E+DDD GS  +  +                   LYKD+ DR +L+++TELQRE
Sbjct: 67  KKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEMTELQRE 126

Query: 343 MILSDRAQKRDEQRLRDRVRPK-QRGKKSQVLKGTP 447
           MILSDRA K+D++ L  ++  K ++GK +   K +P
Sbjct: 127 MILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSP 162