BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008393
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]...   136   2e-30
emb|CBI26230.3| unnamed protein product [Vitis vinifera]              136   2e-30
ref|XP_002281825.1| PREDICTED: photosystem I reaction center sub...   136   2e-30
dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]      134   6e-30
ref|NP_001235355.1| photosystem I subunit PsaD [Glycine max] gi|...   134   1e-29

>dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]
           gi|157678950|dbj|BAF80473.1| PSI reaction center subunit
           II [Citrus sinensis]
          Length = 209

 Score =  136 bits (343), Expect = 2e-30
 Identities = 67/95 (70%), Positives = 74/95 (77%), Gaps = 2/95 (2%)
 Frame = -3

Query: 279 VLVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXXXXXAP--PVGFTPPQLDPNTPSP 106
           +L PWK +SS  FTSPKPL  S+AQ+T+R               PVGFTPPQLDPNTPSP
Sbjct: 21  LLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAAAEEKTEAPTKEAPVGFTPPQLDPNTPSP 80

Query: 105 IFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
           IFGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPT
Sbjct: 81  IFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 115


>emb|CBI26230.3| unnamed protein product [Vitis vinifera]
          Length = 144

 Score =  136 bits (342), Expect = 2e-30
 Identities = 68/94 (72%), Positives = 73/94 (77%)
 Frame = -3

Query: 282 RVLVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXXXXXAPPVGFTPPQLDPNTPSPI 103
           RV VPWK SSSL FT+PK  KSS+A +T               PVGFTPP+LDPNTPSPI
Sbjct: 16  RVTVPWKSSSSLSFTTPKLPKSSVAPRTT-IRAMAEEAPTKEAPVGFTPPELDPNTPSPI 74

Query: 102 FGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
           FGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPT
Sbjct: 75  FGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPT 108


>ref|XP_002281825.1| PREDICTED: photosystem I reaction center subunit II, chloroplastic
           isoform 1 [Vitis vinifera]
           gi|359477510|ref|XP_003631987.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 2
           [Vitis vinifera] gi|359477512|ref|XP_003631988.1|
           PREDICTED: photosystem I reaction center subunit II,
           chloroplastic isoform 3 [Vitis vinifera]
           gi|359477514|ref|XP_003631989.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 4
           [Vitis vinifera] gi|147800882|emb|CAN62373.1|
           hypothetical protein VITISV_036477 [Vitis vinifera]
          Length = 204

 Score =  136 bits (342), Expect = 2e-30
 Identities = 68/94 (72%), Positives = 73/94 (77%)
 Frame = -3

Query: 282 RVLVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXXXXXAPPVGFTPPQLDPNTPSPI 103
           RV VPWK SSSL FT+PK  KSS+A +T               PVGFTPP+LDPNTPSPI
Sbjct: 18  RVTVPWKSSSSLSFTTPKLPKSSVAPRTT-IRAMAEEAPTKEAPVGFTPPELDPNTPSPI 76

Query: 102 FGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
           FGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPT
Sbjct: 77  FGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPT 110


>dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]
          Length = 209

 Score =  134 bits (338), Expect = 6e-30
 Identities = 66/94 (70%), Positives = 72/94 (76%), Gaps = 2/94 (2%)
 Frame = -3

Query: 276 LVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXXXXXAP--PVGFTPPQLDPNTPSPI 103
           L PWK +SS  FTSPKPL  S+ Q+T+R               PVGFTPPQLDPNTPSPI
Sbjct: 22  LNPWKPTSSFSFTSPKPLTFSMGQRTVRAAGAEGKTEAPTKEAPVGFTPPQLDPNTPSPI 81

Query: 102 FGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
           FGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPT
Sbjct: 82  FGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 115


>ref|NP_001235355.1| photosystem I subunit PsaD [Glycine max]
           gi|148372347|gb|ABQ63097.1| photosystem I subunit PsaD
           [Glycine max] gi|255627695|gb|ACU14192.1| unknown
           [Glycine max]
          Length = 210

 Score =  134 bits (336), Expect = 1e-29
 Identities = 70/98 (71%), Positives = 75/98 (76%), Gaps = 4/98 (4%)
 Frame = -3

Query: 282 RVLVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXXXXXAP----PVGFTPPQLDPNT 115
           R  VPWKQ+SSL F+SPKPLK S   +TIR           A     PVGFTPP+LDPNT
Sbjct: 22  RASVPWKQNSSLSFSSPKPLKFS---RTIRAAAADETTEAPAKVEAAPVGFTPPELDPNT 78

Query: 114 PSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
           PSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPT
Sbjct: 79  PSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPT 116