BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008392
         (470 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516772.1| Photosystem I reaction center subunit II, ch...   161   5e-38
ref|XP_002281825.1| PREDICTED: photosystem I reaction center sub...   161   6e-38
dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]...   159   2e-37
dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]      158   5e-37
emb|CBI26230.3| unnamed protein product [Vitis vinifera]              157   7e-37

>ref|XP_002516772.1| Photosystem I reaction center subunit II, chloroplast precursor,
           putative [Ricinus communis] gi|223543860|gb|EEF45386.1|
           Photosystem I reaction center subunit II, chloroplast
           precursor, putative [Ricinus communis]
          Length = 208

 Score =  161 bits (408), Expect = 5e-38
 Identities = 83/120 (69%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
 Frame = -3

Query: 357 MAMAAQSALFTPT-ISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXX 181
           MAMA Q++LFTPT +STP S N  +VPWKQSS L   + KP K SIAQKTI+        
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPRKYSIAQKTIKAAAAEGKT 60

Query: 180 XXXAPPTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
                  EAPVGFTPP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPT
Sbjct: 61  K------EAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPT 114


>ref|XP_002281825.1| PREDICTED: photosystem I reaction center subunit II, chloroplastic
           isoform 1 [Vitis vinifera]
           gi|359477510|ref|XP_003631987.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 2
           [Vitis vinifera] gi|359477512|ref|XP_003631988.1|
           PREDICTED: photosystem I reaction center subunit II,
           chloroplastic isoform 3 [Vitis vinifera]
           gi|359477514|ref|XP_003631989.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 4
           [Vitis vinifera] gi|147800882|emb|CAN62373.1|
           hypothetical protein VITISV_036477 [Vitis vinifera]
          Length = 204

 Score =  161 bits (407), Expect = 6e-38
 Identities = 84/119 (70%), Positives = 93/119 (78%)
 Frame = -3

Query: 357 MAMAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXXX 178
           MAMA Q++LFTPT+S    G+RV VPWK SSSL FT+PK  KSS+A +T           
Sbjct: 1   MAMATQASLFTPTLS----GDRVTVPWKSSSSLSFTTPKLPKSSVAPRTT-----IRAMA 51

Query: 177 XXAPPTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
             AP  EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPT
Sbjct: 52  EEAPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPT 110


>dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]
           gi|157678950|dbj|BAF80473.1| PSI reaction center subunit
           II [Citrus sinensis]
          Length = 209

 Score =  159 bits (403), Expect = 2e-37
 Identities = 79/117 (67%), Positives = 89/117 (76%)
 Frame = -3

Query: 351 MAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXXXXX 172
           MA Q+ LFTP+I T  +   +L PWK +SS  FTSPKPL  S+AQ+T+R           
Sbjct: 1   MATQAGLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAAAEEKTEA- 59

Query: 171 APPTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
            P  EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPT
Sbjct: 60  -PTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 115


>dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]
          Length = 209

 Score =  158 bits (399), Expect = 5e-37
 Identities = 78/117 (66%), Positives = 88/117 (75%)
 Frame = -3

Query: 351 MAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXXXXX 172
           MA Q+ LFTP+I+T  +    L PWK +SS  FTSPKPL  S+ Q+T+R           
Sbjct: 1   MATQAGLFTPSITTTKTSKLPLNPWKPTSSFSFTSPKPLTFSMGQRTVRAAGAEGKTEA- 59

Query: 171 APPTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
            P  EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPT
Sbjct: 60  -PTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 115


>emb|CBI26230.3| unnamed protein product [Vitis vinifera]
          Length = 144

 Score =  157 bits (398), Expect = 7e-37
 Identities = 82/117 (70%), Positives = 91/117 (77%)
 Frame = -3

Query: 351 MAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRXXXXXXXXXXX 172
           MA Q++LFTPT+S    G+RV VPWK SSSL FT+PK  KSS+A +T             
Sbjct: 1   MATQASLFTPTLS----GDRVTVPWKSSSSLSFTTPKLPKSSVAPRTT-----IRAMAEE 51

Query: 171 APPTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 1
           AP  EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPT
Sbjct: 52  APTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPT 108