BLASTX nr result
ID: Coptis23_contig00008375
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00008375
(1808 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524809.1| elongation factor tu, putative [Ricinus comm... 741 0.0
ref|XP_002320388.1| predicted protein [Populus trichocarpa] gi|2... 738 0.0
emb|CAN61809.1| hypothetical protein VITISV_014296 [Vitis vinife... 737 0.0
ref|XP_002302831.1| predicted protein [Populus trichocarpa] gi|2... 734 0.0
ref|XP_003554238.1| PREDICTED: elongation factor Tu, mitochondri... 728 0.0
>ref|XP_002524809.1| elongation factor tu, putative [Ricinus communis]
gi|223535993|gb|EEF37652.1| elongation factor tu,
putative [Ricinus communis]
Length = 449
Score = 741 bits (1913), Expect = 0.0
Identities = 380/452 (84%), Positives = 401/452 (88%), Gaps = 4/452 (0%)
Frame = +3
Query: 105 MASFIIRNPNSKRLLSFSP-IQSCCSRGSI---STHFSFFESGNDQVSEFGSLWRSMATF 272
MA+ +RNPNSKRLL FS I C GS STHFS S ND + WRSMATF
Sbjct: 1 MAAAALRNPNSKRLLPFSSQIYWSCRGGSAACASTHFSL--SSNDSFNH-NPWWRSMATF 57
Query: 273 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIATA 452
TRTKPHVNVGTIGHVDHGKTTLTAAITKVLA+EGKAKA+AFDEIDKAPEEK+RGITIATA
Sbjct: 58 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKKRGITIATA 117
Query: 453 HVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV 632
HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV
Sbjct: 118 HVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV 177
Query: 633 GVPSLVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSALSALKGENDEI 812
GVPSLVCFLNK DAVDDP SFYKFPGDEIPIIRGSALSAL+G N+E+
Sbjct: 178 GVPSLVCFLNKCDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNEEL 237
Query: 813 GKQAILKLMDAVDSYIPDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKTGEDVE 992
GK+AILKLMDAVD YIPDPVRQLDKPFLMPIEDVFSIQGRGTV TGRVEQGTIK GE+VE
Sbjct: 238 GKKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVE 297
Query: 993 IQGLMQGGPLKSTVTGVEMFKKILDHGEAGDNVGLLLRGLKRDDVQRGQVVSKPGTIKTF 1172
I GLMQG PLK+TVTGVEMFKKILD G+AGDNVGLLLRGLKR+DVQRGQV++KPG++KT+
Sbjct: 298 ILGLMQGAPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTY 357
Query: 1173 KRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAIFE 1352
K+FEAEIYVLTKDEGGRHTAFFSNYRPQFY+RTADITGKVELPENVKMVMPGDNVTA FE
Sbjct: 358 KKFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTATFE 417
Query: 1353 LISSVPLEAGQRFALREGGRTVGAGVVSKVIS 1448
LI VPLEAGQRFALREGGRTVGAGVVSKVIS
Sbjct: 418 LILPVPLEAGQRFALREGGRTVGAGVVSKVIS 449
>ref|XP_002320388.1| predicted protein [Populus trichocarpa] gi|222861161|gb|EEE98703.1|
predicted protein [Populus trichocarpa]
Length = 450
Score = 738 bits (1905), Expect = 0.0
Identities = 374/450 (83%), Positives = 395/450 (87%), Gaps = 3/450 (0%)
Frame = +3
Query: 105 MASFIIRNPNSKRLLSFSPIQSCCSRGSISTHFSFFES---GNDQVSEFGSLWRSMATFT 275
MAS ++RNPNSKRLL FS CC RGS STH S ES ND+ S WRSMATFT
Sbjct: 1 MASVVLRNPNSKRLLPFSSQIHCCCRGSASTHSSISESLSSSNDRTSS-SPWWRSMATFT 59
Query: 276 RTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIATAH 455
R KPHVNVGTIGHVDHGKTTLTAAITKVLA+EGKAKAIAFDEIDKAPEEK+RGITIATAH
Sbjct: 60 RNKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 119
Query: 456 VEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 635
VEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DGPMPQTKEHILLARQVG
Sbjct: 120 VEYETTKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTKEHILLARQVG 179
Query: 636 VPSLVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSALSALKGENDEIG 815
VPSLVCFLNKVD V DP +FYKFPGDEIPI++GSALSAL+G N+EIG
Sbjct: 180 VPSLVCFLNKVDVVSDPELIELVEMEVRELLNFYKFPGDEIPIVQGSALSALQGTNEEIG 239
Query: 816 KQAILKLMDAVDSYIPDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKTGEDVEI 995
K AILKLMDAVD YIPDPVRQLDKPFLMPIEDVFSIQGRGTV TGRVEQGTIK GE+VEI
Sbjct: 240 KNAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEI 299
Query: 996 QGLMQGGPLKSTVTGVEMFKKILDHGEAGDNVGLLLRGLKRDDVQRGQVVSKPGTIKTFK 1175
GL + GP K+TVTGVEMFKK+LD G+AGDNVGLLLRGLKR+DVQRGQV++KPGT+KT K
Sbjct: 300 LGLSKDGPKKTTVTGVEMFKKLLDQGQAGDNVGLLLRGLKREDVQRGQVIAKPGTVKTSK 359
Query: 1176 RFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAIFEL 1355
RFEAEIY LTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTA+FEL
Sbjct: 360 RFEAEIYSLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFEL 419
Query: 1356 ISSVPLEAGQRFALREGGRTVGAGVVSKVI 1445
I VPLE GQRFALREGGRTVGAGVVSKV+
Sbjct: 420 ILPVPLETGQRFALREGGRTVGAGVVSKVL 449
>emb|CAN61809.1| hypothetical protein VITISV_014296 [Vitis vinifera]
gi|296086691|emb|CBI32326.3| unnamed protein product
[Vitis vinifera]
Length = 449
Score = 737 bits (1902), Expect = 0.0
Identities = 378/452 (83%), Positives = 398/452 (88%), Gaps = 4/452 (0%)
Frame = +3
Query: 105 MASFIIRNPNSKRLLSFSP-IQSCCSRGSISTHFSFFESGNDQVSEFGSL---WRSMATF 272
MAS +RNPNS+R L S I S C RGSIST FS S ND S WRSM TF
Sbjct: 1 MASVALRNPNSRRFLPLSSKIYSSC-RGSISTQFSI--SPNDSTSSPPPTIPWWRSMGTF 57
Query: 273 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIATA 452
TRTKPHVNVGTIGHVDHGKTTLTAAITKVLA+EGKAKA+AFDEIDKAPEEK+RGITIATA
Sbjct: 58 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKKRGITIATA 117
Query: 453 HVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV 632
HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV
Sbjct: 118 HVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV 177
Query: 633 GVPSLVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSALSALKGENDEI 812
GVPSLVCFLNKVDA DDP SFYKFPGDEIPIIRGSAL AL+G N+EI
Sbjct: 178 GVPSLVCFLNKVDATDDPELVDLVEMELRELLSFYKFPGDEIPIIRGSALCALQGTNEEI 237
Query: 813 GKQAILKLMDAVDSYIPDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKTGEDVE 992
GKQAILKLMDAVD YIPDPVRQLDKPFLMPIEDVFSIQGRGTV TGRVEQGTIK GE+VE
Sbjct: 238 GKQAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVE 297
Query: 993 IQGLMQGGPLKSTVTGVEMFKKILDHGEAGDNVGLLLRGLKRDDVQRGQVVSKPGTIKTF 1172
I GL Q GPLKSTVTGVEMFKKILD G+AGDNVGLLLRGLKR+D+QRGQV++KPGT KT+
Sbjct: 298 ILGLTQSGPLKSTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGTCKTY 357
Query: 1173 KRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAIFE 1352
KRFEAEIYVLTKDEGGRHTAF +NYRPQFY+RTAD+TGKV+LPE VKMVMPGDNVTA+FE
Sbjct: 358 KRFEAEIYVLTKDEGGRHTAFVTNYRPQFYMRTADVTGKVQLPEEVKMVMPGDNVTAVFE 417
Query: 1353 LISSVPLEAGQRFALREGGRTVGAGVVSKVIS 1448
LIS+VPLEAGQRFALREGGRTVGAGVVSKVIS
Sbjct: 418 LISAVPLEAGQRFALREGGRTVGAGVVSKVIS 449
>ref|XP_002302831.1| predicted protein [Populus trichocarpa] gi|222844557|gb|EEE82104.1|
predicted protein [Populus trichocarpa]
Length = 447
Score = 734 bits (1896), Expect = 0.0
Identities = 372/447 (83%), Positives = 394/447 (88%)
Frame = +3
Query: 105 MASFIIRNPNSKRLLSFSPIQSCCSRGSISTHFSFFESGNDQVSEFGSLWRSMATFTRTK 284
MAS +RNPNSKRLL FS CC RGS S+ S ND+ S WRSMATFTRTK
Sbjct: 1 MASLALRNPNSKRLLPFSSQFYCCCRGSPSSLTESLLSSNDRTSS-SPWWRSMATFTRTK 59
Query: 285 PHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIATAHVEY 464
PHVNVGTIGHVDHGKTTLTAAITKVLA+EGKAKAIAFDEIDKAPEEK+RGITIATAHVEY
Sbjct: 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY 119
Query: 465 ETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPS 644
ET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DGPMPQTKEHILLARQVGVPS
Sbjct: 120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTKEHILLARQVGVPS 179
Query: 645 LVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSALSALKGENDEIGKQA 824
LVCFLNKVD V DP SFYKFPGDEIPI+RGSALSAL+G N+EIGK+A
Sbjct: 180 LVCFLNKVDVVSDPELIELVEMEVRELLSFYKFPGDEIPIVRGSALSALQGTNEEIGKKA 239
Query: 825 ILKLMDAVDSYIPDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKTGEDVEIQGL 1004
ILKLMDAVD YIPDPVRQL+KPFLMPIEDVFSIQGRGTV TGRVEQGTIK GE+VEI GL
Sbjct: 240 ILKLMDAVDEYIPDPVRQLEKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEILGL 299
Query: 1005 MQGGPLKSTVTGVEMFKKILDHGEAGDNVGLLLRGLKRDDVQRGQVVSKPGTIKTFKRFE 1184
+ GP ++TVTGVEMFKK+LD G+AGDNVGLLLRGLKR+DVQRGQV++KPGT+KT+KRFE
Sbjct: 300 SKEGPKRTTVTGVEMFKKLLDQGQAGDNVGLLLRGLKREDVQRGQVIAKPGTVKTYKRFE 359
Query: 1185 AEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAIFELISS 1364
AEIY LTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAIFELI
Sbjct: 360 AEIYSLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAIFELILP 419
Query: 1365 VPLEAGQRFALREGGRTVGAGVVSKVI 1445
VPLE GQRFALREGGRTVGAGVVSKV+
Sbjct: 420 VPLEKGQRFALREGGRTVGAGVVSKVL 446
>ref|XP_003554238.1| PREDICTED: elongation factor Tu, mitochondrial-like [Glycine max]
Length = 452
Score = 728 bits (1878), Expect = 0.0
Identities = 370/452 (81%), Positives = 399/452 (88%), Gaps = 4/452 (0%)
Frame = +3
Query: 105 MASFIIRN--PNSKRLLSF-SPIQSCCSRGSISTH-FSFFESGNDQVSEFGSLWRSMATF 272
MA+ ++RN S+RL S I S SR +S F+ + + S WRSMATF
Sbjct: 1 MATLVLRNCSSTSRRLFPLTSQIHSSFSRSPLSPLVFTNDSASSSSSSTPNPWWRSMATF 60
Query: 273 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIATA 452
TRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKA+AFDEIDKAPEEK+RGITIATA
Sbjct: 61 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATA 120
Query: 453 HVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV 632
HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV
Sbjct: 121 HVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV 180
Query: 633 GVPSLVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSALSALKGENDEI 812
GVPSLVCFLNKVDAVDDP SFYKFPGDEIPIIRGSALSAL+G NDEI
Sbjct: 181 GVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEI 240
Query: 813 GKQAILKLMDAVDSYIPDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKTGEDVE 992
G+QAILKLMDAVD YIPDPVRQLDKPFLMPIEDVFSIQGRGTV TGRVEQG IK G++VE
Sbjct: 241 GRQAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVE 300
Query: 993 IQGLMQGGPLKSTVTGVEMFKKILDHGEAGDNVGLLLRGLKRDDVQRGQVVSKPGTIKTF 1172
+ GLMQGGPLK+TVTGVEMFKKILD G+AGDNVGLLLRGLKR+D+QRGQV++KPG++KT
Sbjct: 301 VLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTS 360
Query: 1173 KRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAIFE 1352
K+FEAEIYVLTKDEGGRHTAFFSNY+PQFYLRTAD+TGKVELPENVKMVMPGDNVTA+FE
Sbjct: 361 KKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADVTGKVELPENVKMVMPGDNVTAVFE 420
Query: 1353 LISSVPLEAGQRFALREGGRTVGAGVVSKVIS 1448
LIS+VPLEAGQRFALREGGRTVGAGVVSKV+S
Sbjct: 421 LISAVPLEAGQRFALREGGRTVGAGVVSKVLS 452