BLASTX nr result
ID: Coptis23_contig00008374
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00008374
(1378 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002868913.1| kelch repeat-containing F-box family protein... 74 9e-11
ref|NP_568062.1| F-box/kelch-repeat protein [Arabidopsis thalian... 72 3e-10
gb|ABK28673.1| unknown [Arabidopsis thaliana] 72 3e-10
emb|CAB44694.1| putative protein [Arabidopsis thaliana] gi|72709... 72 3e-10
ref|XP_002868918.1| hypothetical protein ARALYDRAFT_490739 [Arab... 69 3e-09
>ref|XP_002868913.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata
subsp. lyrata] gi|297314749|gb|EFH45172.1| kelch
repeat-containing F-box family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 389
Score = 73.9 bits (180), Expect = 9e-11
Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 4/236 (1%)
Frame = -3
Query: 854 SSESVLAPVCIVPYPEIALYSGSVALGSKIFMMGGYIRGNLSEILAQGSADVFSFDTNSK 675
SS LA + ++ Y A +SG VA+GS I+ +GG S I++
Sbjct: 119 SSGYALAAIPVL-YSRPAHWSGLVAVGSNIYNIGGPTDKEHSSIVSILDCQ--------- 168
Query: 674 VDSFEWRKEPTQLLAKRATPALVATHGKIYVFGDNKFCPKP--WAEVYNPETNLFSPLAD 501
S W + P+ + +R PA GKIYV G K C P W EV++P+T + P++
Sbjct: 169 --SHTWGEAPSMRVERRY-PAANVLDGKIYVTGGCKDCSNPSNWMEVFDPKTQTWEPVSS 225
Query: 500 PPPELTIKGCEDISTALVANGDKIIWVQGAHASSFDVINGLWTQISVPFCKPMGWSLGS- 324
P E I GC +A+V + I +H + G W ++ + +GW S
Sbjct: 226 PGAE--IGGCSMHKSAVV---EGEILFANSHGLIYQPKEGRWKRME--WDMDIGWVWYSY 278
Query: 323 VVVGDLIFTFDHGDVLAYDCANGVWFE-SPVQGLDMCDTCFGRVLNLGNGSLFVLW 159
VV D+++ + GD YD +W V+GL C G++++ G G + V W
Sbjct: 279 CVVEDVLYYYYKGDFKWYDTKARLWRNLKGVKGLPRFARCGGKMVDYG-GKMAVFW 333
>ref|NP_568062.1| F-box/kelch-repeat protein [Arabidopsis thaliana]
gi|122180094|sp|Q1PE10.1|FK102_ARATH RecName:
Full=F-box/kelch-repeat protein At4g39590
gi|91806788|gb|ABE66121.1| kelch repeat-containing F-box
family protein [Arabidopsis thaliana]
gi|332661691|gb|AEE87091.1| F-box/kelch-repeat protein
[Arabidopsis thaliana]
Length = 402
Score = 72.4 bits (176), Expect = 3e-10
Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 18/306 (5%)
Frame = -3
Query: 1022 PGLEMADDKGRSEQSELKVSPLRS---SSEHVKELFISYSLENGVHWYKIDPRKNINCYS 852
P L + RS + ++ RS +E L + + +N HW+ + +N N
Sbjct: 59 PALSRVSKRFRSIVTSPEIYNTRSLLNRTEKCLYLCLRFPFDNNTHWFTL--YQNPNRTV 116
Query: 851 SESVLAPVCIVPYPEIALYSGSVALGSKIFMMGGYIRGNLSEILAQGSADVFSFDTNSKV 672
S+ V + YP + L S VA+GS I+ +GG + + + F + +SKV
Sbjct: 117 SDKVFLQIPSPQYP-LTLSSNLVAVGSNIYRIGGTVGDDSCPL-------GFDREPSSKV 168
Query: 671 D-----SFEWRKEPTQLLAKRATPALVATHGKIYVFGDNKFCPKP--WAEVYNPETNLFS 513
S WR P L +R++ V GKIYV G + P W EV++P+T +
Sbjct: 169 SILDCRSHTWRDGPRMRLNRRSSTTSVVD-GKIYVTGGTEDTDNPSHWIEVFDPKTQSWG 227
Query: 512 PLADPPPELTIKGCEDISTALVANG---DKIIWVQGAHASSFDVINGLWTQISVPFCKPM 342
+ +P +K E++ D +++ G +D G W + + +
Sbjct: 228 TVTNPH---IVKVWEEVCYRRAVKSIGHDGKLYLSGDKYVVYDPDEGKWNSVEEHWL--I 282
Query: 341 GWSLGS--VVVGDLIFTFDHGDVLAYDCANGVWFE-SPVQGL--DMCDTCFGRVLNLGNG 177
G+++GS VV +++F +D G YD W + ++GL D + ++++LG G
Sbjct: 283 GYAIGSSNCVVDNILFYWDQGVFKWYDSKVSSWKQLKGLEGLPDDFSQREYCKLVDLG-G 341
Query: 176 SLFVLW 159
+ VLW
Sbjct: 342 KMAVLW 347
>gb|ABK28673.1| unknown [Arabidopsis thaliana]
Length = 403
Score = 72.4 bits (176), Expect = 3e-10
Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 18/306 (5%)
Frame = -3
Query: 1022 PGLEMADDKGRSEQSELKVSPLRS---SSEHVKELFISYSLENGVHWYKIDPRKNINCYS 852
P L + RS + ++ RS +E L + + +N HW+ + +N N
Sbjct: 59 PALSRVSKRFRSIVTSPEIYNTRSLLNRTEKCLYLCLRFPFDNNTHWFTL--YQNPNRTV 116
Query: 851 SESVLAPVCIVPYPEIALYSGSVALGSKIFMMGGYIRGNLSEILAQGSADVFSFDTNSKV 672
S+ V + YP + L S VA+GS I+ +GG + + + F + +SKV
Sbjct: 117 SDKVFLQIPSPQYP-LTLSSNLVAVGSNIYRIGGTVGDDSCPL-------GFDREPSSKV 168
Query: 671 D-----SFEWRKEPTQLLAKRATPALVATHGKIYVFGDNKFCPKP--WAEVYNPETNLFS 513
S WR P L +R++ V GKIYV G + P W EV++P+T +
Sbjct: 169 SILDCRSHTWRDGPRMRLNRRSSTTSVVD-GKIYVTGGTEDTDNPSHWIEVFDPKTQSWG 227
Query: 512 PLADPPPELTIKGCEDISTALVANG---DKIIWVQGAHASSFDVINGLWTQISVPFCKPM 342
+ +P +K E++ D +++ G +D G W + + +
Sbjct: 228 TVTNPH---IVKVWEEVCYRRAVKSIGHDGKLYLSGDKYVVYDPDEGKWNSVEEHWL--I 282
Query: 341 GWSLGS--VVVGDLIFTFDHGDVLAYDCANGVWFE-SPVQGL--DMCDTCFGRVLNLGNG 177
G+++GS VV +++F +D G YD W + ++GL D + ++++LG G
Sbjct: 283 GYAIGSSNCVVDNILFYWDQGVFKWYDSKVSSWKQLKGLEGLPDDFSQREYCKLVDLG-G 341
Query: 176 SLFVLW 159
+ VLW
Sbjct: 342 KMAVLW 347
>emb|CAB44694.1| putative protein [Arabidopsis thaliana] gi|7270943|emb|CAB80622.1|
putative protein [Arabidopsis thaliana]
Length = 399
Score = 72.4 bits (176), Expect = 3e-10
Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 18/306 (5%)
Frame = -3
Query: 1022 PGLEMADDKGRSEQSELKVSPLRS---SSEHVKELFISYSLENGVHWYKIDPRKNINCYS 852
P L + RS + ++ RS +E L + + +N HW+ + +N N
Sbjct: 56 PALSRVSKRFRSIVTSPEIYNTRSLLNRTEKCLYLCLRFPFDNNTHWFTL--YQNPNRTV 113
Query: 851 SESVLAPVCIVPYPEIALYSGSVALGSKIFMMGGYIRGNLSEILAQGSADVFSFDTNSKV 672
S+ V + YP + L S VA+GS I+ +GG + + + F + +SKV
Sbjct: 114 SDKVFLQIPSPQYP-LTLSSNLVAVGSNIYRIGGTVGDDSCPL-------GFDREPSSKV 165
Query: 671 D-----SFEWRKEPTQLLAKRATPALVATHGKIYVFGDNKFCPKP--WAEVYNPETNLFS 513
S WR P L +R++ V GKIYV G + P W EV++P+T +
Sbjct: 166 SILDCRSHTWRDGPRMRLNRRSSTTSVVD-GKIYVTGGTEDTDNPSHWIEVFDPKTQSWG 224
Query: 512 PLADPPPELTIKGCEDISTALVANG---DKIIWVQGAHASSFDVINGLWTQISVPFCKPM 342
+ +P +K E++ D +++ G +D G W + + +
Sbjct: 225 TVTNPH---IVKVWEEVCYRRAVKSIGHDGKLYLSGDKYVVYDPDEGKWNSVEEHWL--I 279
Query: 341 GWSLGS--VVVGDLIFTFDHGDVLAYDCANGVWFE-SPVQGL--DMCDTCFGRVLNLGNG 177
G+++GS VV +++F +D G YD W + ++GL D + ++++LG G
Sbjct: 280 GYAIGSSNCVVDNILFYWDQGVFKWYDSKVSSWKQLKGLEGLPDDFSQREYCKLVDLG-G 338
Query: 176 SLFVLW 159
+ VLW
Sbjct: 339 KMAVLW 344
>ref|XP_002868918.1| hypothetical protein ARALYDRAFT_490739 [Arabidopsis lyrata subsp.
lyrata] gi|297314754|gb|EFH45177.1| hypothetical protein
ARALYDRAFT_490739 [Arabidopsis lyrata subsp. lyrata]
Length = 400
Score = 68.9 bits (167), Expect = 3e-09
Identities = 81/334 (24%), Positives = 148/334 (44%), Gaps = 16/334 (4%)
Frame = -3
Query: 1112 LETRDDKVGSELSDLKVSPLGSSSSYLRRCPGLEMADDKGRSEQSELKVSPLRS---SSE 942
+ T + +GS +DL ++ S P L + RS + ++ RS +E
Sbjct: 24 MTTEPNSIGSLSNDLLLNCFARVSRMYY--PALSRVSKRFRSIVTSPEIYHTRSLLNRTE 81
Query: 941 HVKELFISYSLENGVHWYKI--DPRKNINCYSSESVLAPVCIVPYPEIALYSGSVALGSK 768
L + + +N HW+ + +P ++++ SS VL + YP + S VA+GS
Sbjct: 82 KCLYLCLRFPFDNNTHWFTLYQNPNRSVSNKSSGKVLVQIPSPEYP-LTQSSNLVAVGSN 140
Query: 767 IFMMGGYIRGNLSEIL--AQGSADVFSFDTNSKVDSFEWRKEPTQLLAKRATPALVATHG 594
I+ +GG + + + + S+ V D S WR P L ++++ V G
Sbjct: 141 IYKIGGTVGDDFCPLGWDRKPSSKVSVLDCRSHT----WRDGPRMRLDRKSSTTSVVD-G 195
Query: 593 KIYVFGDNKFCPKP--WAEVYNPETNLFSPLADPPPELTIKGCEDISTALVANG---DKI 429
KIYV G K P W EV++P+T + + +P ++ E+ S V +
Sbjct: 196 KIYVTGGTKDTDNPSNWIEVFDPKTQSWGSVTNP---RIVRLWEEESYRRVVKSIGHEGK 252
Query: 428 IWVQGAHASSFDVINGLWTQISVPFCKPMGWSLGS--VVVGDLIFTFDHGDVLAYDCANG 255
+++ G ++ G+W + + +G +L S V+ +++F +D G YD
Sbjct: 253 LYLFGDEFVVYNPEEGIWNPVGED--RLIGCALKSSYCVIDNILFYWDQGVFKWYDSKVP 310
Query: 254 VWFE-SPVQGL-DMCDTCFGRVLNLGNGSLFVLW 159
W E ++GL D + R+++ G G + VLW
Sbjct: 311 SWKELKGLEGLPDFSHREYCRLVDFG-GKMAVLW 343