BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008297
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAY90802.1| hypothetical protein OsI_12404 [Oryza sativa Indi...    62   4e-08
gb|AAD34613.1|AF153277_1 DNA-directed RNA polymerase IIa [Nicoti...    58   7e-07
ref|XP_002459814.1| hypothetical protein SORBIDRAFT_02g011150 [S...    58   7e-07
ref|NP_001050570.1| Os03g0586600 [Oryza sativa Japonica Group] g...    58   7e-07
tpg|DAA50151.1| TPA: hypothetical protein ZEAMMB73_917488 [Zea m...    57   2e-06

>gb|EAY90802.1| hypothetical protein OsI_12404 [Oryza sativa Indica Group]
          Length = 143

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 31/70 (44%), Positives = 39/70 (55%)
 Frame = +1

Query: 67  MADEDYNDLDMEYADXXXXXXXXXXXXXXXXXXXXXXPDPLLGDDEEKEEQKTVQKDRKT 246
           MAD+DYND+DM Y D                      PD ++G + E +EQ+  Q+ RKT
Sbjct: 1   MADDDYNDMDMGYEDEPPEPEIEEGAEEEPENNNEDGPDEVVGAEAEDKEQEKTQRPRKT 60

Query: 247 SKYMTKYERA 276
           SKYMTKYERA
Sbjct: 61  SKYMTKYERA 70


>gb|AAD34613.1|AF153277_1 DNA-directed RNA polymerase IIa [Nicotiana tabacum]
           gi|4960152|gb|AAD34614.1|AF153278_1 DNA-directed RNA
           polymerase IIb [Nicotiana tabacum]
          Length = 143

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 34/71 (47%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +1

Query: 67  MADEDYNDLDMEYADXXXXXXXXXXXXXXXXXXXXXX-PDPLLGDDEEKEEQKTVQKDRK 243
           MAD+DY D+D  Y D                       PDPLLG+ EEK EQ+ V++ RK
Sbjct: 1   MADDDY-DMDGGYVDEPIEPEPDEGAEIEEDNGNNEDIPDPLLGEGEEKTEQEPVERPRK 59

Query: 244 TSKYMTKYERA 276
           TSKYMTKYERA
Sbjct: 60  TSKYMTKYERA 70


>ref|XP_002459814.1| hypothetical protein SORBIDRAFT_02g011150 [Sorghum bicolor]
           gi|241923191|gb|EER96335.1| hypothetical protein
           SORBIDRAFT_02g011150 [Sorghum bicolor]
          Length = 143

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/70 (40%), Positives = 39/70 (55%)
 Frame = +1

Query: 67  MADEDYNDLDMEYADXXXXXXXXXXXXXXXXXXXXXXPDPLLGDDEEKEEQKTVQKDRKT 246
           MAD+DYN++DM Y D                      PD ++G + E +EQ+ + + RKT
Sbjct: 1   MADDDYNEMDMGYEDEPPEAEIEEGAEEELENNNEDTPDDVVGAEAEDKEQEKIARARKT 60

Query: 247 SKYMTKYERA 276
           +KYMTKYERA
Sbjct: 61  TKYMTKYERA 70


>ref|NP_001050570.1| Os03g0586600 [Oryza sativa Japonica Group]
           gi|50399946|gb|AAT76334.1| putative DNA-directed RNA
           polymerase II subunit [Oryza sativa Japonica Group]
           gi|108709558|gb|ABF97353.1| DNA-directed RNA polymerases
           I, II, and III 14.4 kDa polypeptide, putative, expressed
           [Oryza sativa Japonica Group]
           gi|113549041|dbj|BAF12484.1| Os03g0586600 [Oryza sativa
           Japonica Group] gi|125586969|gb|EAZ27633.1| hypothetical
           protein OsJ_11577 [Oryza sativa Japonica Group]
           gi|215678566|dbj|BAG92221.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 142

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/70 (44%), Positives = 39/70 (55%)
 Frame = +1

Query: 67  MADEDYNDLDMEYADXXXXXXXXXXXXXXXXXXXXXXPDPLLGDDEEKEEQKTVQKDRKT 246
           MAD+DYND+DM Y D                      PD ++G + E +EQ+  Q+ RKT
Sbjct: 1   MADDDYNDMDMGYEDEPPEPEIEEGAEEEPENNEDG-PDEVVGAEAEDKEQEKTQRPRKT 59

Query: 247 SKYMTKYERA 276
           SKYMTKYERA
Sbjct: 60  SKYMTKYERA 69


>tpg|DAA50151.1| TPA: hypothetical protein ZEAMMB73_917488 [Zea mays]
          Length = 73

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/70 (41%), Positives = 41/70 (58%)
 Frame = +1

Query: 67  MADEDYNDLDMEYADXXXXXXXXXXXXXXXXXXXXXXPDPLLGDDEEKEEQKTVQKDRKT 246
           MAD+DYN++DM Y D                       D + G+ E+KE++KT +++RKT
Sbjct: 1   MADDDYNEIDMGYEDEPPEPEIEEGAEEELENNEDAPDDVIGGEGEDKEQEKT-KRERKT 59

Query: 247 SKYMTKYERA 276
           +KYMTKYERA
Sbjct: 60  TKYMTKYERA 69