BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008234
         (920 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...    53   2e-12
ref|NP_176930.2| DNA polymerase alpha 2 [Arabidopsis thaliana] g...    46   5e-10
dbj|BAC43176.1| putative DNA polymerase alpha subunit [Arabidops...    46   5e-10
gb|AEL99206.1| DNA polymerase alpha subunit B family protein, pa...    48   1e-09
ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabi...    46   2e-09

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score = 53.1 bits (126), Expect(2) = 2e-12
 Identities = 26/34 (76%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
 Frame = -1

Query: 182 FVFPQHAFDIHS-DLKNQITRLTNPGLFDANKVK 84
           FVFPQ AF IH  DLK+QIT LTNPG+FDAN+VK
Sbjct: 454 FVFPQPAFSIHPPDLKHQITSLTNPGMFDANEVK 487



 Score = 45.8 bits (107), Expect(2) = 2e-12
 Identities = 21/29 (72%), Positives = 23/29 (79%)
 Frame = -3

Query: 261 LQDYAECMGYATRVVLVPSLRDAYHDFRF 175
           LQDY E MG A RV+LVPS+RDA HDF F
Sbjct: 428 LQDYVEYMGSAARVILVPSIRDANHDFVF 456


>ref|NP_176930.2| DNA polymerase alpha 2 [Arabidopsis thaliana]
           gi|332196552|gb|AEE34673.1| DNA polymerase alpha 2
           [Arabidopsis thaliana]
          Length = 620

 Score = 46.2 bits (108), Expect(2) = 5e-10
 Identities = 21/34 (61%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
 Frame = -1

Query: 182 FVFPQHAFDIH-SDLKNQITRLTNPGLFDANKVK 84
           F+FPQ  FDIH  DL++Q+T L+NPG F+AN+VK
Sbjct: 455 FIFPQPPFDIHIPDLEHQMTSLSNPGTFEANQVK 488



 Score = 44.3 bits (103), Expect(2) = 5e-10
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = -3

Query: 261 LQDYAECMGYATRVVLVPSLRDAYHDFRF 175
           LQDY E MG   RVVLVPS+RDA HDF F
Sbjct: 429 LQDYVEFMGSEVRVVLVPSIRDANHDFIF 457


>dbj|BAC43176.1| putative DNA polymerase alpha subunit [Arabidopsis thaliana]
           gi|29028994|gb|AAO64876.1| At1g67630 [Arabidopsis
           thaliana]
          Length = 620

 Score = 46.2 bits (108), Expect(2) = 5e-10
 Identities = 21/34 (61%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
 Frame = -1

Query: 182 FVFPQHAFDIH-SDLKNQITRLTNPGLFDANKVK 84
           F+FPQ  FDIH  DL++Q+T L+NPG F+AN+VK
Sbjct: 455 FIFPQPPFDIHIPDLEHQMTSLSNPGTFEANQVK 488



 Score = 44.3 bits (103), Expect(2) = 5e-10
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = -3

Query: 261 LQDYAECMGYATRVVLVPSLRDAYHDFRF 175
           LQDY E MG   RVVLVPS+RDA HDF F
Sbjct: 429 LQDYVEFMGSEVRVVLVPSIRDANHDFIF 457


>gb|AEL99206.1| DNA polymerase alpha subunit B family protein, partial [Silene
           latifolia]
          Length = 140

 Score = 48.1 bits (113), Expect(2) = 1e-09
 Identities = 23/33 (69%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
 Frame = -1

Query: 182 FVFPQHAFDIHS-DLKNQITRLTNPGLFDANKV 87
           FVFPQ  FDIH  +LK+QI+ LTNPG+FDA+KV
Sbjct: 46  FVFPQPPFDIHPPELKDQISSLTNPGIFDADKV 78



 Score = 41.2 bits (95), Expect(2) = 1e-09
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = -3

Query: 261 LQDYAECMGYATRVVLVPSLRDAYHDFRF 175
           L D+ E MG +TRV+LVPS+RDA HDF F
Sbjct: 20  LGDHVEYMGSSTRVLLVPSIRDANHDFVF 48


>ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp.
           lyrata] gi|297334453|gb|EFH64871.1| DNA polymerase alpha
           subunit B family [Arabidopsis lyrata subsp. lyrata]
          Length = 619

 Score = 46.2 bits (108), Expect(2) = 2e-09
 Identities = 21/34 (61%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
 Frame = -1

Query: 182 FVFPQHAFDIH-SDLKNQITRLTNPGLFDANKVK 84
           F+FPQ  FDIH  DL++Q+T L+NPG F+AN+VK
Sbjct: 454 FIFPQPPFDIHIPDLEHQMTSLSNPGTFEANQVK 487



 Score = 42.7 bits (99), Expect(2) = 2e-09
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = -3

Query: 261 LQDYAECMGYATRVVLVPSLRDAYHDFRF 175
           L+DY E MG   RVVLVPS+RDA HDF F
Sbjct: 428 LRDYVEFMGSEVRVVLVPSIRDANHDFIF 456