BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008133
         (356 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46819.2|RPOC1_SINAL RecName: Full=DNA-directed RNA polymeras...    97   2e-18
ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus co...    93   2e-17
gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia]            92   4e-17
gb|AFB18557.1| RNA polymerase beta' subunit [Kingia australis]         92   4e-17
gb|AEZ01418.1| RNA polymerase beta (chloroplast) [Japonolirion o...    92   4e-17

>sp|P46819.2|RPOC1_SINAL RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta'; Short=RNA polymerase subunit beta'
           gi|5457428|emb|CAB48413.1| RNA polymerase A beta prime
           subunit [Sinapis alba]
          Length = 688

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 44/50 (88%), Positives = 46/50 (92%)
 Frame = +1

Query: 1   GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDLNSDFT 150
           GYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV FD N +F+
Sbjct: 105 GYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVCFDRNPNFS 154


>ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus communis]
           gi|339516156|gb|AEJ82546.1| RNA polymerase beta subunit
           [Ricinus communis]
          Length = 654

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 44/56 (78%), Positives = 47/56 (83%)
 Frame = +1

Query: 1   GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDLNSDFTGSE*ET 168
           GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV + +   FT    +T
Sbjct: 105 GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVKYSIPLFFTAQGFDT 160


>gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia]
          Length = 684

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 42/46 (91%), Positives = 43/46 (93%)
 Frame = +1

Query: 1   GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDLN 138
           GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV  D +
Sbjct: 105 GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFS 150


>gb|AFB18557.1| RNA polymerase beta' subunit [Kingia australis]
          Length = 683

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 42/46 (91%), Positives = 43/46 (93%)
 Frame = +1

Query: 1   GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDLN 138
           GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV  D +
Sbjct: 105 GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFS 150


>gb|AEZ01418.1| RNA polymerase beta (chloroplast) [Japonolirion osense]
          Length = 686

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 42/46 (91%), Positives = 43/46 (93%)
 Frame = +1

Query: 1   GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDLN 138
           GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV  D +
Sbjct: 105 GYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFS 150