BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007991
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG22123.1| polyprotein [Prunus avium]                             162   3e-38
gb|ABG22121.1| polyprotein [Solanum melongena]                        144   6e-33
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     142   3e-32
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]          139   2e-31
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   139   3e-31

>gb|ABG22123.1| polyprotein [Prunus avium]
          Length = 276

 Score =  162 bits (409), Expect = 3e-38
 Identities = 77/100 (77%), Positives = 91/100 (91%)
 Frame = -2

Query: 301 GTCYVSGFVDSDYAGDLDRRRSTTGYVFMMHGAPVSWRSMLQATVALSTTEAEYMAVAEA 122
           G C V G+VDSDYAGDLD+RRSTTG+VF + G PVSWRS+LQ+TVALSTTEAEYMAV EA
Sbjct: 169 GQCVV-GYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAEYMAVTEA 227

Query: 121 VKEALWLRGLLDDLGIEQNSVALYCDSQSAIHLAKNQVHH 2
           +KEA+WL+GLLDDLG++Q+ V +YCDSQSAI+LAKNQVHH
Sbjct: 228 IKEAIWLQGLLDDLGVQQDHVDVYCDSQSAIYLAKNQVHH 267


>gb|ABG22121.1| polyprotein [Solanum melongena]
          Length = 361

 Score =  144 bits (364), Expect = 6e-33
 Identities = 70/100 (70%), Positives = 84/100 (84%)
 Frame = -2

Query: 301 GTCYVSGFVDSDYAGDLDRRRSTTGYVFMMHGAPVSWRSMLQATVALSTTEAEYMAVAEA 122
           G+C V G+ DSDYAGDLD+RRSTTGY+F +   PVSW+S LQATVALSTTEAEYMA+ EA
Sbjct: 254 GSCVV-GYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWKSTLQATVALSTTEAEYMAITEA 312

Query: 121 VKEALWLRGLLDDLGIEQNSVALYCDSQSAIHLAKNQVHH 2
           VKEA+WL GLL++LG+ Q  + ++ DSQSAIHLAKNQV H
Sbjct: 313 VKEAIWLHGLLEELGVGQKHLMVHSDSQSAIHLAKNQVFH 352


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  142 bits (358), Expect = 3e-32
 Identities = 69/100 (69%), Positives = 77/100 (77%)
 Frame = -2

Query: 301  GTCYVSGFVDSDYAGDLDRRRSTTGYVFMMHGAPVSWRSMLQATVALSTTEAEYMAVAEA 122
            G   V+GFVDSD+AGDLDRRRST GYVF   G PVSW++ LQA  ALSTTEAEYMA+ EA
Sbjct: 1145 GEACVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEA 1204

Query: 121  VKEALWLRGLLDDLGIEQNSVALYCDSQSAIHLAKNQVHH 2
             KEA+WL GL   LG+ Q  V + CDSQSAIHLAKNQV H
Sbjct: 1205 SKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFH 1244


>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
          Length = 297

 Score =  139 bits (351), Expect = 2e-31
 Identities = 63/94 (67%), Positives = 82/94 (87%)
 Frame = -2

Query: 283 GFVDSDYAGDLDRRRSTTGYVFMMHGAPVSWRSMLQATVALSTTEAEYMAVAEAVKEALW 104
           G+ DSD+AGDLD++RST+GYVF + G  VSWRS+LQ+T+ALSTTEAEY+A  EAVKEA+W
Sbjct: 145 GYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIW 204

Query: 103 LRGLLDDLGIEQNSVALYCDSQSAIHLAKNQVHH 2
           L+GLL DLG+ Q ++A++CD+QSAI LAKNQ +H
Sbjct: 205 LKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYH 238


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  139 bits (349), Expect = 3e-31
 Identities = 66/104 (63%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
 Frame = -2

Query: 310  YGGGT-CYVSGFVDSDYAGDLDRRRSTTGYVFMMHGAPVSWRSMLQATVALSTTEAEYMA 134
            YGG T C V+G+ DSDYAGD+D RRS TGYVF + G+ VSW++ LQ TV LSTTEAEYMA
Sbjct: 1149 YGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMA 1208

Query: 133  VAEAVKEALWLRGLLDDLGIEQNSVALYCDSQSAIHLAKNQVHH 2
            + EA KE +WL+GL+ DLG+  +   +YCDS SAI LAK+QVHH
Sbjct: 1209 LTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHH 1252