BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007920
         (1257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   297   5e-88
emb|CBI25589.3| unnamed protein product [Vitis vinifera]              297   5e-88
ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein c...   294   4e-87
ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein co...   291   2e-86
ref|XP_003549705.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   289   6e-86

>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
            [Vitis vinifera] gi|147858113|emb|CAN81413.1|
            hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score =  297 bits (760), Expect(2) = 5e-88
 Identities = 152/193 (78%), Positives = 166/193 (86%), Gaps = 4/193 (2%)
 Frame = +3

Query: 615  QGVDASIMKIATLCNVNYDEDIYIFMPLLFNTLPVVKMATEPLNLSELPKMVEGLRKINK 794
            +GVDASIMK ATLCN++YDED+YIF PLLFNTLPVVK ATEPLN SELPKMVEGLRKI+K
Sbjct: 568  EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 627

Query: 795  S*PLATTKVEESGEHTILGTGKLYLDCIMKDLRELYSEVEVKVADPVVSFCETVVESSYI 974
            S PLA TKVEESGEHTILGTG+LYLD IMKDLRELYSEVEVKVADPVVSFCETVVESS  
Sbjct: 628  SYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS-- 685

Query: 975  HEMFC*NTQQKEQNQY----EPFKKGLVEDIENGIVSIDWNRKTIGEFFQTKYDWDLLAA 1142
              M C      ++N+     EP +KGL EDIENG+VSIDW+RK +G+FFQTKYDWDLLAA
Sbjct: 686  -SMKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVSIDWHRKKLGDFFQTKYDWDLLAA 744

Query: 1143 RSIWAFGPDKQVP 1181
            RSIWAFGPDKQ P
Sbjct: 745  RSIWAFGPDKQGP 757



 Score = 55.5 bits (132), Expect(2) = 5e-88
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +1

Query: 1177 FQWGAREGPLCDKPIRNVRLKIVDAKI 1257
            FQWGAREGPLCD+PIRNV+ KIVDA+I
Sbjct: 785  FQWGAREGPLCDEPIRNVKFKIVDARI 811



 Score =  114 bits (284), Expect = 7e-23
 Identities = 53/71 (74%), Positives = 60/71 (84%)
 Frame = +1

Query: 406 DHIFATSATAGGIEAIHPAAGNVYFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 585
           +HI A S+TAG ++ I PAAGNV FASA+ GWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 299 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 358

Query: 586 *GDVYYHPDTR 618
            GD+YYHPD R
Sbjct: 359 WGDMYYHPDAR 369


>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  297 bits (760), Expect(2) = 5e-88
 Identities = 152/193 (78%), Positives = 166/193 (86%), Gaps = 4/193 (2%)
 Frame = +3

Query: 615  QGVDASIMKIATLCNVNYDEDIYIFMPLLFNTLPVVKMATEPLNLSELPKMVEGLRKINK 794
            +GVDASIMK ATLCN++YDED+YIF PLLFNTLPVVK ATEPLN SELPKMVEGLRKI+K
Sbjct: 511  EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 570

Query: 795  S*PLATTKVEESGEHTILGTGKLYLDCIMKDLRELYSEVEVKVADPVVSFCETVVESSYI 974
            S PLA TKVEESGEHTILGTG+LYLD IMKDLRELYSEVEVKVADPVVSFCETVVESS  
Sbjct: 571  SYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS-- 628

Query: 975  HEMFC*NTQQKEQNQY----EPFKKGLVEDIENGIVSIDWNRKTIGEFFQTKYDWDLLAA 1142
              M C      ++N+     EP +KGL EDIENG+VSIDW+RK +G+FFQTKYDWDLLAA
Sbjct: 629  -SMKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVSIDWHRKKLGDFFQTKYDWDLLAA 687

Query: 1143 RSIWAFGPDKQVP 1181
            RSIWAFGPDKQ P
Sbjct: 688  RSIWAFGPDKQGP 700



 Score = 55.5 bits (132), Expect(2) = 5e-88
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +1

Query: 1177 FQWGAREGPLCDKPIRNVRLKIVDAKI 1257
            FQWGAREGPLCD+PIRNV+ KIVDA+I
Sbjct: 728  FQWGAREGPLCDEPIRNVKFKIVDARI 754



 Score =  114 bits (284), Expect = 7e-23
 Identities = 53/71 (74%), Positives = 60/71 (84%)
 Frame = +1

Query: 406 DHIFATSATAGGIEAIHPAAGNVYFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 585
           +HI A S+TAG ++ I PAAGNV FASA+ GWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 242 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 301

Query: 586 *GDVYYHPDTR 618
            GD+YYHPD R
Sbjct: 302 WGDMYYHPDAR 312


>ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein component [Medicago
            truncatula] gi|355510562|gb|AES91704.1| 116 kDa U5 small
            nuclear ribonucleoprotein component [Medicago truncatula]
          Length = 983

 Score =  294 bits (752), Expect(2) = 4e-87
 Identities = 151/193 (78%), Positives = 164/193 (84%), Gaps = 4/193 (2%)
 Frame = +3

Query: 615  QGVDASIMKIATLCNVNYDEDIYIFMPLLFNTLPVVKMATEPLNLSELPKMVEGLRKINK 794
            +GVDASIMK ATLCNV++DED+YIF PLLFNTL VVK ATEPLN SELPKMVEGLRKI+K
Sbjct: 568  EGVDASIMKTATLCNVDFDEDVYIFRPLLFNTLSVVKTATEPLNPSELPKMVEGLRKISK 627

Query: 795  S*PLATTKVEESGEHTILGTGKLYLDCIMKDLRELYSEVEVKVADPVVSFCETVVESSYI 974
            S PLA TKVEESGEHTILGTG+LYLD IMKDLRELYSEVEVKVADPVVSFCETVVESS  
Sbjct: 628  SYPLAVTKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS-- 685

Query: 975  HEMFC*NTQQKEQNQY----EPFKKGLVEDIENGIVSIDWNRKTIGEFFQTKYDWDLLAA 1142
              M C      ++N+     EP ++GL EDIENG+VS DWNRK +GEFFQTKYDWDLLAA
Sbjct: 686  -SMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSTDWNRKKLGEFFQTKYDWDLLAA 744

Query: 1143 RSIWAFGPDKQVP 1181
            RSIWAFGPDKQ P
Sbjct: 745  RSIWAFGPDKQGP 757



 Score = 55.5 bits (132), Expect(2) = 4e-87
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +1

Query: 1177 FQWGAREGPLCDKPIRNVRLKIVDAKI 1257
            FQWGAREGPLCD+PIRNV+ KIVDA+I
Sbjct: 785  FQWGAREGPLCDEPIRNVKFKIVDARI 811



 Score =  100 bits (250), Expect = 6e-19
 Identities = 46/71 (64%), Positives = 54/71 (76%)
 Frame = +1

Query: 406 DHIFATSATAGGIEAIHPAAGNVYFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 585
           +HI A S+ AG ++ I P AGNV FAS   GWSFTL SFAK+Y KLHG+P +A KFASRL
Sbjct: 299 NHIAAASSVAGDVQVIDPVAGNVCFASGTAGWSFTLQSFAKMYGKLHGVPLEANKFASRL 358

Query: 586 *GDVYYHPDTR 618
            GD YYHPD+R
Sbjct: 359 WGDFYYHPDSR 369


>ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein component, putative
            [Ricinus communis] gi|223527776|gb|EEF29877.1| 116 kD U5
            small nuclear ribonucleoprotein component, putative
            [Ricinus communis]
          Length = 992

 Score =  291 bits (746), Expect(2) = 2e-86
 Identities = 152/194 (78%), Positives = 164/194 (84%), Gaps = 5/194 (2%)
 Frame = +3

Query: 615  QGVDASIMKIATLCNVNYD-EDIYIFMPLLFNTLPVVKMATEPLNLSELPKMVEGLRKIN 791
            +GVDASIMK ATLCNVNY  ED+YIF PL FNTLPVVK ATEPLN SELPKMVEGLRKI+
Sbjct: 571  EGVDASIMKTATLCNVNYSYEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKIS 630

Query: 792  KS*PLATTKVEESGEHTILGTGKLYLDCIMKDLRELYSEVEVKVADPVVSFCETVVESSY 971
            KS PLA TKVEESGEHTILGTG+LYLD IMKDLRELYSEVEVKVADPVVSFCETVVESS 
Sbjct: 631  KSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS- 689

Query: 972  IHEMFC*NTQQKEQNQY----EPFKKGLVEDIENGIVSIDWNRKTIGEFFQTKYDWDLLA 1139
               M C      ++N+     EP +KGL EDIENG+VSIDWNRK +G+FF+TKYDWDLLA
Sbjct: 690  --SMKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVSIDWNRKALGDFFKTKYDWDLLA 747

Query: 1140 ARSIWAFGPDKQVP 1181
            ARSIWAFGPDKQ P
Sbjct: 748  ARSIWAFGPDKQGP 761



 Score = 55.5 bits (132), Expect(2) = 2e-86
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +1

Query: 1177 FQWGAREGPLCDKPIRNVRLKIVDAKI 1257
            FQWGAREGPLCD+PIRNV+ KIVDA+I
Sbjct: 789  FQWGAREGPLCDEPIRNVKFKIVDARI 815



 Score =  115 bits (287), Expect = 3e-23
 Identities = 55/71 (77%), Positives = 60/71 (84%)
 Frame = +1

Query: 406 DHIFATSATAGGIEAIHPAAGNVYFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 585
           +HI A S+TAG ++ I PAAGNV FASAN GWSFTL SFAKLY+KLHGIPFDA KFASRL
Sbjct: 302 NHITAGSSTAGSVQVIDPAAGNVCFASANAGWSFTLQSFAKLYLKLHGIPFDADKFASRL 361

Query: 586 *GDVYYHPDTR 618
            GD YYHPDTR
Sbjct: 362 WGDWYYHPDTR 372


>ref|XP_003549705.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like
            [Glycine max]
          Length = 988

 Score =  289 bits (739), Expect(2) = 6e-86
 Identities = 148/193 (76%), Positives = 163/193 (84%), Gaps = 4/193 (2%)
 Frame = +3

Query: 615  QGVDASIMKIATLCNVNYDEDIYIFMPLLFNTLPVVKMATEPLNLSELPKMVEGLRKINK 794
            +GVDASIMK +TLCNV+YDED+YIF PL FNTL VVK ATEPLN SELPKMVEGLRKI+K
Sbjct: 568  EGVDASIMKTSTLCNVDYDEDVYIFRPLQFNTLSVVKTATEPLNPSELPKMVEGLRKISK 627

Query: 795  S*PLATTKVEESGEHTILGTGKLYLDCIMKDLRELYSEVEVKVADPVVSFCETVVESSYI 974
            S PLA TKVEESGEHTILGTG+LYLD IMKDLRELYSEVEVKVADPVVSFCETVVESS  
Sbjct: 628  SYPLAVTKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS-- 685

Query: 975  HEMFC*NTQQKEQNQY----EPFKKGLVEDIENGIVSIDWNRKTIGEFFQTKYDWDLLAA 1142
              M C      ++N+     EP ++GL EDIENG+VS DW++K +GEFFQTKYDWDLLAA
Sbjct: 686  -SMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSTDWSKKKLGEFFQTKYDWDLLAA 744

Query: 1143 RSIWAFGPDKQVP 1181
            RSIWAFGPDKQ P
Sbjct: 745  RSIWAFGPDKQGP 757



 Score = 56.6 bits (135), Expect(2) = 6e-86
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +1

Query: 1177 FQWGAREGPLCDKPIRNVRLKIVDAKI 1257
            FQWGAREGPLCD+PIRNV+ KIVDAKI
Sbjct: 785  FQWGAREGPLCDEPIRNVKFKIVDAKI 811



 Score =  105 bits (261), Expect = 3e-20
 Identities = 49/70 (70%), Positives = 55/70 (78%)
 Frame = +1

Query: 409 HIFATSATAGGIEAIHPAAGNVYFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL* 588
           HI A S+ AGG++ + P AGNV FASA  GWSFTL SFAKLY KLHGIP +A KFASRL 
Sbjct: 300 HISAASSIAGGVQVVDPVAGNVCFASATAGWSFTLQSFAKLYGKLHGIPLEANKFASRLW 359

Query: 589 GDVYYHPDTR 618
           GD Y+HPDTR
Sbjct: 360 GDYYFHPDTR 369