BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007861
         (1110 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor...   426   e-117
ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor...   426   e-117
emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera]   425   e-117
ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinu...   419   e-115
ref|XP_003544395.1| PREDICTED: probable pre-mRNA-splicing factor...   419   e-115

>ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
            helicase-like [Vitis vinifera]
          Length = 1172

 Score =  426 bits (1095), Expect = e-117
 Identities = 218/305 (71%), Positives = 244/305 (80%)
 Frame = -2

Query: 917  NEPELLMVYAGKVSRVMETGCFVQLNDFRGKEGLVHVSQLASRRIPNAKDVVKRGQDVFV 738
            +EPEL  VY G+VSRVM+TGCFVQLND +GKEGLVHVSQ+A+RR+ NAKDVVKR Q+V+V
Sbjct: 215  DEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYV 274

Query: 737  KVISMTGQKMSLSMRDVDQTTGKDLIPMKKRSDDDASRVNPQSSNQGPTSRTGLSGIRIT 558
            KVIS++GQK+SLSMRDVDQ TG+DLIP+KK  +DDA R NP  +NQGP SRTGLSGIRI 
Sbjct: 275  KVISVSGQKLSLSMRDVDQNTGRDLIPLKKSLEDDALRTNPSGANQGPVSRTGLSGIRIV 334

Query: 557  EDDGPSSSRRPLKRMSSLEKWEAKQLMAAGVMDIREHPMYDEDEDGXXXXXXXXXXXXXX 378
            E++  + SRRPLKRMSS EKWEAKQL+A+GV+DIRE PMYD++ DG              
Sbjct: 335  EENDAAPSRRPLKRMSSPEKWEAKQLIASGVLDIREFPMYDDEGDGMLYQEEGAEEELEI 394

Query: 377  XXXXXEPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXXXXXXXLIKXXXXXXXXXXRTMLD 198
                 EPAFLQGQSRYS+DMSPVKIFKNPEG           LIK          RTMLD
Sbjct: 395  EMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLD 454

Query: 197  SIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQE 18
            SIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA+GKALTFGQRSKLSIQE
Sbjct: 455  SIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQE 514

Query: 17   QRQSL 3
            QRQSL
Sbjct: 515  QRQSL 519


>ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
            helicase-like isoform 2 [Vitis vinifera]
          Length = 1175

 Score =  426 bits (1095), Expect = e-117
 Identities = 218/305 (71%), Positives = 244/305 (80%)
 Frame = -2

Query: 917  NEPELLMVYAGKVSRVMETGCFVQLNDFRGKEGLVHVSQLASRRIPNAKDVVKRGQDVFV 738
            +EPEL  VY G+VSRVM+TGCFVQLND +GKEGLVHVSQ+A+RR+ NAKDVVKR Q+V+V
Sbjct: 218  DEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYV 277

Query: 737  KVISMTGQKMSLSMRDVDQTTGKDLIPMKKRSDDDASRVNPQSSNQGPTSRTGLSGIRIT 558
            KVIS++GQK+SLSMRDVDQ TG+DLIP+KK  +DDA R NP  +NQGP SRTGLSGIRI 
Sbjct: 278  KVISVSGQKLSLSMRDVDQNTGRDLIPLKKSLEDDALRTNPSGANQGPVSRTGLSGIRIV 337

Query: 557  EDDGPSSSRRPLKRMSSLEKWEAKQLMAAGVMDIREHPMYDEDEDGXXXXXXXXXXXXXX 378
            E++  + SRRPLKRMSS EKWEAKQL+A+GV+DIRE PMYD++ DG              
Sbjct: 338  EENDAAPSRRPLKRMSSPEKWEAKQLIASGVLDIREFPMYDDEGDGMLYQEEGAEEELEI 397

Query: 377  XXXXXEPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXXXXXXXLIKXXXXXXXXXXRTMLD 198
                 EPAFLQGQSRYS+DMSPVKIFKNPEG           LIK          RTMLD
Sbjct: 398  EMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLD 457

Query: 197  SIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQE 18
            SIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA+GKALTFGQRSKLSIQE
Sbjct: 458  SIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQE 517

Query: 17   QRQSL 3
            QRQSL
Sbjct: 518  QRQSL 522


>emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera]
          Length = 1162

 Score =  425 bits (1093), Expect = e-117
 Identities = 218/305 (71%), Positives = 243/305 (79%)
 Frame = -2

Query: 917  NEPELLMVYAGKVSRVMETGCFVQLNDFRGKEGLVHVSQLASRRIPNAKDVVKRGQDVFV 738
            +EPEL  VY G+VSRVM+TGCFVQLND +GKEGLVHVSQ+A+RR+ NAKDVVKR Q+V+V
Sbjct: 227  DEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYV 286

Query: 737  KVISMTGQKMSLSMRDVDQTTGKDLIPMKKRSDDDASRVNPQSSNQGPTSRTGLSGIRIT 558
            KVIS++GQK+SLSMRDVDQ TG+DLIP+KK  +DDA R NP   NQGP SRTGLSGIRI 
Sbjct: 287  KVISVSGQKLSLSMRDVDQNTGRDLIPLKKSLEDDALRTNPSGXNQGPVSRTGLSGIRIV 346

Query: 557  EDDGPSSSRRPLKRMSSLEKWEAKQLMAAGVMDIREHPMYDEDEDGXXXXXXXXXXXXXX 378
            E++  + SRRPLKRMSS EKWEAKQL+A+GV+DIRE PMYD++ DG              
Sbjct: 347  EENDAAPSRRPLKRMSSPEKWEAKQLIASGVLDIREFPMYDDEGDGMLYQEEGAEEELEI 406

Query: 377  XXXXXEPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXXXXXXXLIKXXXXXXXXXXRTMLD 198
                 EPAFLQGQSRYS+DMSPVKIFKNPEG           LIK          RTMLD
Sbjct: 407  EMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLD 466

Query: 197  SIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQE 18
            SIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA+GKALTFGQRSKLSIQE
Sbjct: 467  SIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQE 526

Query: 17   QRQSL 3
            QRQSL
Sbjct: 527  QRQSL 531


>ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223551474|gb|EEF52960.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 1177

 Score =  419 bits (1077), Expect = e-115
 Identities = 215/307 (70%), Positives = 244/307 (79%), Gaps = 2/307 (0%)
 Frame = -2

Query: 917  NEPELLMVYAGKVSRVMETGCFVQLNDFRGKEGLVHVSQLASRRIPNAKDVVKRGQDVFV 738
            ++PEL  VY G+VSRVM++GCFVQLNDFRGKEGLVHVSQ+A+RRI NAKDVVKR QDVFV
Sbjct: 218  SDPELYRVYKGRVSRVMDSGCFVQLNDFRGKEGLVHVSQMATRRIANAKDVVKRDQDVFV 277

Query: 737  KVISMTGQKMSLSMRDVDQTTGKDLIPMKKRS--DDDASRVNPQSSNQGPTSRTGLSGIR 564
            KVIS++GQK+SLSMRDVDQ +GKDL+P+KK S  DDD+ R NP  S +GP +RTGLSGIR
Sbjct: 278  KVISVSGQKLSLSMRDVDQNSGKDLLPLKKSSGDDDDSLRTNPSGSKEGPVTRTGLSGIR 337

Query: 563  ITEDDGPSSSRRPLKRMSSLEKWEAKQLMAAGVMDIREHPMYDEDEDGXXXXXXXXXXXX 384
            I E+D    SRRPLKRMSS E+WEAKQL+A+GV+ ++E+PMYD++ DG            
Sbjct: 338  ILEEDDAVPSRRPLKRMSSPERWEAKQLIASGVLGVQEYPMYDDEGDGLLYQEGGAEEEL 397

Query: 383  XXXXXXXEPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXXXXXXXLIKXXXXXXXXXXRTM 204
                   EPAFLQGQ+RYS+DMSPVKIFKNPEG           LIK          RTM
Sbjct: 398  EIELNEDEPAFLQGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTM 457

Query: 203  LDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSI 24
            LDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA+GKALTFGQRSKLSI
Sbjct: 458  LDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSI 517

Query: 23   QEQRQSL 3
            QEQRQSL
Sbjct: 518  QEQRQSL 524


>ref|XP_003544395.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
            helicase-like [Glycine max]
          Length = 1203

 Score =  419 bits (1076), Expect = e-115
 Identities = 214/304 (70%), Positives = 241/304 (79%)
 Frame = -2

Query: 914  EPELLMVYAGKVSRVMETGCFVQLNDFRGKEGLVHVSQLASRRIPNAKDVVKRGQDVFVK 735
            E EL  VY G++SRVMETGCFVQL+DFRGKEGLVHVSQ+A+RRI NAKDVVKR Q+V+VK
Sbjct: 247  ELELYAVYKGRISRVMETGCFVQLDDFRGKEGLVHVSQMATRRITNAKDVVKRDQEVYVK 306

Query: 734  VISMTGQKMSLSMRDVDQTTGKDLIPMKKRSDDDASRVNPQSSNQGPTSRTGLSGIRITE 555
            VIS++GQK+SLSMRDVDQ TGKDL+P+KK S+DDA R+NPQ S  GP +RTGLSGIRI E
Sbjct: 307  VISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDAMRMNPQDSKGGPAARTGLSGIRIVE 366

Query: 554  DDGPSSSRRPLKRMSSLEKWEAKQLMAAGVMDIREHPMYDEDEDGXXXXXXXXXXXXXXX 375
            +D   SSRRPLKRMSS E+WEAKQL+A+GV+ + E+P YD++ DG               
Sbjct: 367  EDDAGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGLLYQEEGAEEELEIE 426

Query: 374  XXXXEPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXXXXXXXLIKXXXXXXXXXXRTMLDS 195
                EPAFLQGQSRYS+DMSPVKIFKNPEG           LIK          RTMLDS
Sbjct: 427  LNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDS 486

Query: 194  IPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQEQ 15
            IPKDLNRPWEDPMPE+GERHLAQELRGVGLSAYDMPEWKKDAYGK +TFGQRSKLSIQEQ
Sbjct: 487  IPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQ 546

Query: 14   RQSL 3
            RQSL
Sbjct: 547  RQSL 550