BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007771
         (583 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   264   9e-69
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      258   5e-67
emb|CBI26820.3| unnamed protein product [Vitis vinifera]              257   1e-66
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   257   1e-66
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   257   1e-66

>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  264 bits (674), Expect = 9e-69
 Identities = 129/192 (67%), Positives = 156/192 (81%)
 Frame = +1

Query: 1    NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDYPKTGAPAKIPPHLYVK 180
            NY+V+DSLG+IANAHTA ADKE   A S  C ELAR FSIAVD+PKTG PA+IP +L  +
Sbjct: 862  NYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAR 921

Query: 181  EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
            EYPDFMEKPDKP+YES+ VIGKLFREVKDI P  S I SFT +VA++CYD DMEVDG+  
Sbjct: 922  EYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFED 981

Query: 361  YLDDAQQFKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
            Y+DDA  +K  YD+KLGNLM+ YGIKTEA++L+   +K S S+ +K+DA+AIG AVRSL+
Sbjct: 982  YIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLK 1041

Query: 541  KEARKWFDEKGS 576
            KEAR WF+EKGS
Sbjct: 1042 KEARSWFNEKGS 1053


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  258 bits (659), Expect = 5e-67
 Identities = 126/192 (65%), Positives = 155/192 (80%)
 Frame = +1

Query: 1    NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDYPKTGAPAKIPPHLYVK 180
            NY+V+DSLGII+NAHTAFAD+E G A S  C ELA+LFSIAVD+PKTG PA+IP  L VK
Sbjct: 840  NYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVK 899

Query: 181  EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
            E+PDFMEKPDKP+Y+S  VIGKLFREVK++ P+   I   T E  KR YD DMEV+G+  
Sbjct: 900  EFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVD 959

Query: 361  YLDDAQQFKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
            Y+DDA  +K KYD+KLGNLMD YG+KTEA+IL+ G++K S S+ +K+DA++I  AVRSLR
Sbjct: 960  YIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAESISMAVRSLR 1019

Query: 541  KEARKWFDEKGS 576
            KEAR WF+EKGS
Sbjct: 1020 KEARSWFNEKGS 1031


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  257 bits (656), Expect = 1e-66
 Identities = 128/194 (65%), Positives = 156/194 (80%)
 Frame = +1

Query: 1    NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDYPKTGAPAKIPPHLYVK 180
            NY+V+DSLGIIANAHT FADKE   A    C ELA+LFSIAVD+PKTG PA+IP +L VK
Sbjct: 650  NYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVK 709

Query: 181  EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
            EYPDFMEK DKPTYESQ VIGKLFREVKDI PH   I SFT +VA++ YD DMEV G+  
Sbjct: 710  EYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFED 769

Query: 361  YLDDAQQFKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
            Y+ DA  +K +YD+KLGNLMD YGIKTE++IL+  +++ S S++R+KDA+AIG AV+SLR
Sbjct: 770  YVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLR 829

Query: 541  KEARKWFDEKGSNS 582
            KEAR WF++ GS +
Sbjct: 830  KEARTWFNKMGSET 843


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  257 bits (656), Expect = 1e-66
 Identities = 128/194 (65%), Positives = 156/194 (80%)
 Frame = +1

Query: 1    NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDYPKTGAPAKIPPHLYVK 180
            NY+V+DSLGIIANAHT FADKE   A    C ELA+LFSIAVD+PKTG PA+IP +L VK
Sbjct: 852  NYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVK 911

Query: 181  EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
            EYPDFMEK DKPTYESQ VIGKLFREVKDI PH   I SFT +VA++ YD DMEV G+  
Sbjct: 912  EYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFED 971

Query: 361  YLDDAQQFKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
            Y+ DA  +K +YD+KLGNLMD YGIKTE++IL+  +++ S S++R+KDA+AIG AV+SLR
Sbjct: 972  YVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLR 1031

Query: 541  KEARKWFDEKGSNS 582
            KEAR WF++ GS +
Sbjct: 1032 KEARTWFNKMGSET 1045


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  257 bits (656), Expect = 1e-66
 Identities = 128/194 (65%), Positives = 156/194 (80%)
 Frame = +1

Query: 1   NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDYPKTGAPAKIPPHLYVK 180
           NY+V+DSLGIIANAHT FADKE   A    C ELA+LFSIAVD+PKTG PA+IP +L VK
Sbjct: 385 NYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVK 444

Query: 181 EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
           EYPDFMEK DKPTYESQ VIGKLFREVKDI PH   I SFT +VA++ YD DMEV G+  
Sbjct: 445 EYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFED 504

Query: 361 YLDDAQQFKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
           Y+ DA  +K +YD+KLGNLMD YGIKTE++IL+  +++ S S++R+KDA+AIG AV+SLR
Sbjct: 505 YVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLR 564

Query: 541 KEARKWFDEKGSNS 582
           KEAR WF++ GS +
Sbjct: 565 KEARTWFNKMGSET 578