BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007770
         (875 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   363   3e-98
emb|CBI26820.3| unnamed protein product [Vitis vinifera]              362   5e-98
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   362   5e-98
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   362   5e-98
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      357   3e-96

>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  363 bits (932), Expect = 3e-98
 Identities = 178/269 (66%), Positives = 212/269 (78%), Gaps = 7/269 (2%)
 Frame = +1

Query: 1    NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVK 180
            NY+V+DSLG+IANAHTA ADKE   A S  C ELAR FSIAVDFPKTG PA+IP +L  +
Sbjct: 862  NYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAR 921

Query: 181  EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
            EYPDFMEKPDKP+YES+ VIGKLFREVKDI P  S I SFT +VA++CYD DMEVDG+  
Sbjct: 922  EYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFED 981

Query: 361  YLDDAQQYKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
            Y+DDA  YK  YD+KLGNLM+ YGIKTEA++L+   +K S S+ +K+DA+AIG AVRSL+
Sbjct: 982  YIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLK 1041

Query: 541  KEARKWFDEKG----SNSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDK 708
            KEAR WF+EKG    S +DD+ AKASAWYHVTYH NYWG YNEGM RDH+LSFPWCVYDK
Sbjct: 1042 KEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDK 1101

Query: 709  LIHIKRQKAKKVPE---YESLEEQFWRGV 786
            LI IKR+ + ++       S+E QF RG+
Sbjct: 1102 LIQIKRRNSARIRRSLILPSVERQFSRGL 1130


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  362 bits (930), Expect = 5e-98
 Identities = 179/270 (66%), Positives = 214/270 (79%), Gaps = 5/270 (1%)
 Frame = +1

Query: 1    NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVK 180
            NY+V+DSLGIIANAHT FADKE   A    C ELA+LFSIAVDFPKTG PA+IP +L VK
Sbjct: 650  NYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVK 709

Query: 181  EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
            EYPDFMEK DKPTYESQ VIGKLFREVKDI PH   I SFT +VA++ YD DMEV G+  
Sbjct: 710  EYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFED 769

Query: 361  YLDDAQQYKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
            Y+ DA  YK +YD+KLGNLMD YGIKTE++IL+  +++ S S++R+KDA+AIG AV+SLR
Sbjct: 770  YVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLR 829

Query: 541  KEARKWFDEKG----SNSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDK 708
            KEAR WF++ G    S +DD+YAKASAWYHVTYHP+YWG YNEGM RDH+LSFPWCVYDK
Sbjct: 830  KEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDK 889

Query: 709  LIHIKRQK-AKKVPEYESLEEQFWRGVRFG 795
            LIH KR+K + +     SLE +  +G+R G
Sbjct: 890  LIHTKRKKMSGRSLHLSSLERRLSQGLRLG 919


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  362 bits (930), Expect = 5e-98
 Identities = 179/270 (66%), Positives = 214/270 (79%), Gaps = 5/270 (1%)
 Frame = +1

Query: 1    NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVK 180
            NY+V+DSLGIIANAHT FADKE   A    C ELA+LFSIAVDFPKTG PA+IP +L VK
Sbjct: 852  NYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVK 911

Query: 181  EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
            EYPDFMEK DKPTYESQ VIGKLFREVKDI PH   I SFT +VA++ YD DMEV G+  
Sbjct: 912  EYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFED 971

Query: 361  YLDDAQQYKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
            Y+ DA  YK +YD+KLGNLMD YGIKTE++IL+  +++ S S++R+KDA+AIG AV+SLR
Sbjct: 972  YVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLR 1031

Query: 541  KEARKWFDEKG----SNSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDK 708
            KEAR WF++ G    S +DD+YAKASAWYHVTYHP+YWG YNEGM RDH+LSFPWCVYDK
Sbjct: 1032 KEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDK 1091

Query: 709  LIHIKRQK-AKKVPEYESLEEQFWRGVRFG 795
            LIH KR+K + +     SLE +  +G+R G
Sbjct: 1092 LIHTKRKKMSGRSLHLSSLERRLSQGLRLG 1121


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  362 bits (930), Expect = 5e-98
 Identities = 179/270 (66%), Positives = 214/270 (79%), Gaps = 5/270 (1%)
 Frame = +1

Query: 1    NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVK 180
            NY+V+DSLGIIANAHT FADKE   A    C ELA+LFSIAVDFPKTG PA+IP +L VK
Sbjct: 385  NYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVK 444

Query: 181  EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
            EYPDFMEK DKPTYESQ VIGKLFREVKDI PH   I SFT +VA++ YD DMEV G+  
Sbjct: 445  EYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFED 504

Query: 361  YLDDAQQYKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
            Y+ DA  YK +YD+KLGNLMD YGIKTE++IL+  +++ S S++R+KDA+AIG AV+SLR
Sbjct: 505  YVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLR 564

Query: 541  KEARKWFDEKG----SNSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDK 708
            KEAR WF++ G    S +DD+YAKASAWYHVTYHP+YWG YNEGM RDH+LSFPWCVYDK
Sbjct: 565  KEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDK 624

Query: 709  LIHIKRQK-AKKVPEYESLEEQFWRGVRFG 795
            LIH KR+K + +     SLE +  +G+R G
Sbjct: 625  LIHTKRKKMSGRSLHLSSLERRLSQGLRLG 654


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  357 bits (915), Expect = 3e-96
 Identities = 175/268 (65%), Positives = 211/268 (78%), Gaps = 6/268 (2%)
 Frame = +1

Query: 1    NYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVK 180
            NY+V+DSLGII+NAHTAFAD+E   A S  C ELA+LFSIAVDFPKTG PA+IP  L VK
Sbjct: 840  NYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVK 899

Query: 181  EYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAY 360
            EYPDFMEKPDKP+Y+S  VIGKLFREVK++ P+   I   T E  +R YD DMEV+G+  
Sbjct: 900  EYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFED 959

Query: 361  YLDDAQQYKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLR 540
            Y+DDA  +K KYD+KLGNLMD YG+KTEA+IL  G++K S S+ +K+DA+AI  AVRSLR
Sbjct: 960  YIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLR 1019

Query: 541  KEARKWFDEKGS----NSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDK 708
            KEAR WF+EKGS      DD YAKASAWY+VTYHP+YWG YNEGM RDH+LSFPWCVYDK
Sbjct: 1020 KEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDK 1079

Query: 709  LIHIKRQKA--KKVPEYESLEEQFWRGV 786
            LI IK++KA  ++  +  SLE +F RG+
Sbjct: 1080 LIQIKKEKAAVREALDLSSLEHRFQRGL 1107