BLASTX nr result
ID: Coptis23_contig00007743
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00007743
(703 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002516892.1| nucleic acid binding protein, putative [Rici... 218 7e-55
ref|XP_002330352.1| predicted protein [Populus trichocarpa] gi|2... 216 3e-54
ref|XP_003518955.1| PREDICTED: zinc finger CCCH domain-containin... 215 6e-54
ref|XP_003536245.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger ... 215 8e-54
ref|XP_003529584.1| PREDICTED: zinc finger CCCH domain-containin... 215 8e-54
>ref|XP_002516892.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223543980|gb|EEF45506.1| nucleic acid binding
protein, putative [Ricinus communis]
Length = 481
Score = 218 bits (556), Expect = 7e-55
Identities = 93/119 (78%), Positives = 101/119 (84%)
Frame = +1
Query: 343 EPNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCK 522
E +C+YY+RTG CGYGSRCRFNHPRDR A GA E+PER GQPVCQY+M+TGTCK
Sbjct: 50 EADCIYYLRTGFCGYGSRCRFNHPRDRGAVLGAARAGAAEFPERVGQPVCQYYMRTGTCK 109
Query: 523 FGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYYVKTGQCKFGLTCKFHHPQPA 699
FGASCKYHHPK GG + V LNYYGYPLRPGEKECTYYVKTGQCKFG+TCKFHHPQPA
Sbjct: 110 FGASCKYHHPKQGGGSANPVSLNYYGYPLRPGEKECTYYVKTGQCKFGVTCKFHHPQPA 168
Score = 112 bits (279), Expect = 9e-23
Identities = 47/81 (58%), Positives = 57/81 (70%)
Frame = +1
Query: 448 RQGEEYPEREGQPVCQYFMKTGTCKFGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKE 627
++ +PER GQP CQY+MKTG CKFG+SCKYHHP P ++V L+ G PLRPG
Sbjct: 292 KEQPSFPERPGQPECQYYMKTGDCKFGSSCKYHHPPELIAPKTNVVLSPMGLPLRPGAPH 351
Query: 628 CTYYVKTGQCKFGLTCKFHHP 690
CT+Y + GQCKFG CKF HP
Sbjct: 352 CTHYTQRGQCKFGPACKFDHP 372
Score = 86.7 bits (213), Expect = 4e-15
Identities = 32/80 (40%), Positives = 51/80 (63%)
Frame = +1
Query: 463 YPEREGQPVCQYFMKTGTCKFGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYYV 642
YPER + C Y+++TG C +G+ C+++HP+ G + + +P R G+ C YY+
Sbjct: 44 YPERPEEADCIYYLRTGFCGYGSRCRFNHPRDRGAVLGAARAGAAEFPERVGQPVCQYYM 103
Query: 643 KTGQCKFGLTCKFHHPQPAG 702
+TG CKFG +CK+HHP+ G
Sbjct: 104 RTGTCKFGASCKYHHPKQGG 123
Score = 73.2 bits (178), Expect = 5e-11
Identities = 29/70 (41%), Positives = 42/70 (60%)
Frame = +1
Query: 343 EPNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCK 522
+P C YYM+TG C +GS C+++HP + A V+ P R G P C ++ + G CK
Sbjct: 303 QPECQYYMKTGDCKFGSSCKYHHPPELIAPKTNVVLSPMGLPLRPGAPHCTHYTQRGQCK 362
Query: 523 FGASCKYHHP 552
FG +CK+ HP
Sbjct: 363 FGPACKFDHP 372
Score = 61.6 bits (148), Expect = 1e-07
Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 550 PKYEGG----PMSSVPLNYYGYPLRPGEKECTYYVKTGQCKFGLTCKFHHP 690
P Y GG P SS +P RPG+ EC YY+KTG CKFG +CK+HHP
Sbjct: 276 PAYTGGYQAMPSSSNQKEQPSFPERPGQPECQYYMKTGDCKFGSSCKYHHP 326
>ref|XP_002330352.1| predicted protein [Populus trichocarpa] gi|222871556|gb|EEF08687.1|
predicted protein [Populus trichocarpa]
Length = 477
Score = 216 bits (551), Expect = 3e-54
Identities = 90/118 (76%), Positives = 100/118 (84%)
Frame = +1
Query: 343 EPNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCK 522
E +C+YY+RTG CGYG+RCR+NHPRDR A GA G EYPER GQP+CQY+M+TGTCK
Sbjct: 50 EQDCMYYLRTGFCGYGARCRYNHPRDRNAVLGAARAGGAEYPERAGQPLCQYYMRTGTCK 109
Query: 523 FGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYYVKTGQCKFGLTCKFHHPQP 696
FGASCKYHHPK GG S V LNYYGYPLRPGE+ECTYY+KTGQCKFG TCKFHHPQP
Sbjct: 110 FGASCKYHHPKQGGGSASPVSLNYYGYPLRPGERECTYYIKTGQCKFGATCKFHHPQP 167
Score = 101 bits (251), Expect = 2e-19
Identities = 43/76 (56%), Positives = 53/76 (69%)
Frame = +1
Query: 463 YPEREGQPVCQYFMKTGTCKFGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYYV 642
+PER GQP CQY++KTG CKF +SC+YHHP S+V L+ G PLRPG C++Y
Sbjct: 298 FPERPGQPECQYYIKTGDCKFRSSCRYHHPPELVVSKSNVVLSPIGLPLRPGAPTCSHYT 357
Query: 643 KTGQCKFGLTCKFHHP 690
+ GQCKFG CKF HP
Sbjct: 358 QRGQCKFGPACKFDHP 373
Score = 92.4 bits (228), Expect = 8e-17
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = +1
Query: 460 EYPEREGQPVCQYFMKTGTCKFGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYY 639
EYPER + C Y+++TG C +GA C+Y+HP+ + + YP R G+ C YY
Sbjct: 43 EYPERSNEQDCMYYLRTGFCGYGARCRYNHPRDRNAVLGAARAGGAEYPERAGQPLCQYY 102
Query: 640 VKTGQCKFGLTCKFHHPQPAG 702
++TG CKFG +CK+HHP+ G
Sbjct: 103 MRTGTCKFGASCKYHHPKQGG 123
Score = 71.2 bits (173), Expect = 2e-10
Identities = 27/70 (38%), Positives = 41/70 (58%)
Frame = +1
Query: 343 EPNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCK 522
+P C YY++TG C + S CR++HP + + V+ P R G P C ++ + G CK
Sbjct: 304 QPECQYYIKTGDCKFRSSCRYHHPPELVVSKSNVVLSPIGLPLRPGAPTCSHYTQRGQCK 363
Query: 523 FGASCKYHHP 552
FG +CK+ HP
Sbjct: 364 FGPACKFDHP 373
>ref|XP_003518955.1| PREDICTED: zinc finger CCCH domain-containing protein 32-like
[Glycine max]
Length = 471
Score = 215 bits (548), Expect = 6e-54
Identities = 91/119 (76%), Positives = 102/119 (85%)
Frame = +1
Query: 346 PNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCKF 525
PNCVYYMRTG CGYG RCR+NHPRDR A A AV G+ YPER G+P CQY++KTGTCKF
Sbjct: 52 PNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGD-YPERVGEPPCQYYLKTGTCKF 110
Query: 526 GASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYYVKTGQCKFGLTCKFHHPQPAG 702
GASCK+HHPK GG +S PLN YGYPLRPGEKEC+YY+KTGQCKFG++CKFHHPQPAG
Sbjct: 111 GASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAG 169
Score = 97.8 bits (242), Expect = 2e-18
Identities = 40/76 (52%), Positives = 54/76 (71%)
Frame = +1
Query: 463 YPEREGQPVCQYFMKTGTCKFGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYYV 642
YPER G+P CQY+++TG CKFG +C+YHHP+ ++ L+ G PLRPG + C +Y+
Sbjct: 293 YPERPGEPECQYYLRTGDCKFGLACRYHHPR--DHIVARPLLSPVGLPLRPGLQPCAFYL 350
Query: 643 KTGQCKFGLTCKFHHP 690
+ G CKFG TCKF HP
Sbjct: 351 QNGHCKFGSTCKFDHP 366
Score = 75.9 bits (185), Expect = 8e-12
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Frame = +1
Query: 343 EPNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCK 522
EP C YY+RTG C +G CR++HPRD A + G P R G C ++++ G CK
Sbjct: 299 EPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVG--LPLRPGLQPCAFYLQNGHCK 356
Query: 523 FGASCKYHHP----KYEGGPMSSVPLNYYGYPL 609
FG++CK+ HP +Y S + + YP+
Sbjct: 357 FGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPV 389
Score = 59.3 bits (142), Expect = 7e-07
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +1
Query: 601 YPLRPGEKECTYYVKTGQCKFGLTCKFHHPQ 693
YP RPGE EC YY++TG CKFGL C++HHP+
Sbjct: 293 YPERPGEPECQYYLRTGDCKFGLACRYHHPR 323
>ref|XP_003536245.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing
protein 32-like [Glycine max]
Length = 494
Score = 215 bits (547), Expect = 8e-54
Identities = 91/119 (76%), Positives = 103/119 (86%)
Frame = +1
Query: 346 PNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCKF 525
PNCVYYMRTG CGYGSRCR+NHPRDR A A AV G+ YPER G+P CQY++KTGTCKF
Sbjct: 52 PNCVYYMRTGVCGYGSRCRYNHPRDRAAVAAAVRVTGD-YPERVGEPPCQYYLKTGTCKF 110
Query: 526 GASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYYVKTGQCKFGLTCKFHHPQPAG 702
GASCK+HHPK GG ++ PLN YGYPLRPGEKEC+YY+KTGQCKFG++CKFHHPQPAG
Sbjct: 111 GASCKFHHPKNGGGYLTQAPLNIYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAG 169
Score = 97.4 bits (241), Expect = 2e-18
Identities = 42/89 (47%), Positives = 61/89 (68%)
Frame = +1
Query: 424 TAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCKFGASCKYHHPKYEGGPMSSVPLNYYGY 603
T +G+ L+ + +PER G+P CQY+++TG CKFG +C+YHHP+ ++ L+ G
Sbjct: 281 TGPSGSNLKD-QFFPERPGEPECQYYLRTGDCKFGLACRYHHPR--DHIVARPLLSPVGL 337
Query: 604 PLRPGEKECTYYVKTGQCKFGLTCKFHHP 690
PLRPG + C +Y++ G CKFG TCKF HP
Sbjct: 338 PLRPGVQPCAFYLQNGHCKFGSTCKFDHP 366
Score = 74.7 bits (182), Expect = 2e-11
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +1
Query: 343 EPNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCK 522
EP C YY+RTG C +G CR++HPRD A + G P R G C ++++ G CK
Sbjct: 299 EPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVG--LPLRPGVQPCAFYLQNGHCK 356
Query: 523 FGASCKYHHP 552
FG++CK+ HP
Sbjct: 357 FGSTCKFDHP 366
Score = 57.8 bits (138), Expect = 2e-06
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 601 YPLRPGEKECTYYVKTGQCKFGLTCKFHHPQ 693
+P RPGE EC YY++TG CKFGL C++HHP+
Sbjct: 293 FPERPGEPECQYYLRTGDCKFGLACRYHHPR 323
>ref|XP_003529584.1| PREDICTED: zinc finger CCCH domain-containing protein 32-like
[Glycine max]
Length = 484
Score = 215 bits (547), Expect = 8e-54
Identities = 90/120 (75%), Positives = 102/120 (85%)
Frame = +1
Query: 343 EPNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCK 522
E +C+YY+RTG CGYG+RCRFNHPRDR A GA R G E+PER GQPVCQY+M+TG+CK
Sbjct: 50 EADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAPRTGGEFPERVGQPVCQYYMRTGSCK 109
Query: 523 FGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYYVKTGQCKFGLTCKFHHPQPAG 702
FGASCKYHHP+ G + VPLNYYGYPLR G+KEC+YYVKTGQCKFG TCKFHHPQPAG
Sbjct: 110 FGASCKYHHPRQVPGTATPVPLNYYGYPLRVGQKECSYYVKTGQCKFGATCKFHHPQPAG 169
Score = 101 bits (251), Expect = 2e-19
Identities = 41/76 (53%), Positives = 51/76 (67%)
Frame = +1
Query: 463 YPEREGQPVCQYFMKTGTCKFGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTYYV 642
+PER QP C ++MKTG CKFG C+YHHP + P ++V L+ G PLRPG CT+Y
Sbjct: 302 FPERPDQPECHHYMKTGDCKFGPLCRYHHPPDKSAPKANVTLSPVGLPLRPGAPPCTHYT 361
Query: 643 KTGQCKFGLTCKFHHP 690
+ G CKFG CKF HP
Sbjct: 362 QRGVCKFGSACKFDHP 377
Score = 84.0 bits (206), Expect = 3e-14
Identities = 31/79 (39%), Positives = 49/79 (62%)
Frame = +1
Query: 457 EEYPEREGQPVCQYFMKTGTCKFGASCKYHHPKYEGGPMSSVPLNYYGYPLRPGEKECTY 636
E YP R + C Y+++TG C +G C+++HP+ + + P +P R G+ C Y
Sbjct: 42 ESYPMRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAPRTGGEFPERVGQPVCQY 101
Query: 637 YVKTGQCKFGLTCKFHHPQ 693
Y++TG CKFG +CK+HHP+
Sbjct: 102 YMRTGSCKFGASCKYHHPR 120
Score = 75.1 bits (183), Expect = 1e-11
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +1
Query: 343 EPNCVYYMRTGTCGYGSRCRFNHPRDRTAAAGAVLRQGEEYPEREGQPVCQYFMKTGTCK 522
+P C +YM+TG C +G CR++HP D++A V P R G P C ++ + G CK
Sbjct: 308 QPECHHYMKTGDCKFGPLCRYHHPPDKSAPKANVTLSPVGLPLRPGAPPCTHYTQRGVCK 367
Query: 523 FGASCKYHHP 552
FG++CK+ HP
Sbjct: 368 FGSACKFDHP 377