BLASTX nr result
ID: Coptis23_contig00007708
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00007708
(1013 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273353.2| PREDICTED: uncharacterized protein LOC100258... 233 1e-78
ref|XP_002300621.1| predicted protein [Populus trichocarpa] gi|2... 227 2e-75
ref|XP_003522980.1| PREDICTED: RNA-binding protein 24-like [Glyc... 237 9e-75
ref|XP_002307819.1| predicted protein [Populus trichocarpa] gi|2... 228 3e-74
ref|XP_003527630.1| PREDICTED: 40S ribosomal protein S19, mitoch... 224 5e-73
>ref|XP_002273353.2| PREDICTED: uncharacterized protein LOC100258188 [Vitis vinifera]
Length = 346
Score = 233 bits (595), Expect(2) = 1e-78
Identities = 109/141 (77%), Positives = 123/141 (87%), Gaps = 1/141 (0%)
Frame = -1
Query: 773 DTTYTKVFVGGLAWETQSETMRRYFDQFGDILEAVVITDRITGRSKGYGFVTFRDPEAAK 594
DTTYTKVFVGGLAWETQSETMRRYF+QFG+ILEAVVITD+ TGRSKGYGFVTFRDPE+A+
Sbjct: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
Query: 593 RACLDPSPVIDGRRANCNLASLGRPRPPPPYGHLRAMTPYFASGQSSR-PYIGSPNYHQP 417
RACLDP+P+IDGRRANCNLASLGRPRP YG LR +TPY S ++R Y+G+ Y QP
Sbjct: 88 RACLDPAPIIDGRRANCNLASLGRPRPSMSYGRLRPVTPYLGSVPATRGSYVGNFGYQQP 147
Query: 416 VTYNYQQGFAYPQYGYTAYGP 354
V+Y+YQQGF YP YGY AYGP
Sbjct: 148 VSYSYQQGFMYPSYGYAAYGP 168
Score = 87.4 bits (215), Expect(2) = 1e-78
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = -2
Query: 250 VNAAIYPYGQSRQPLPSNQGYTAVHGYAMPGHHVVQFSGANVNALTAAHIPTNQAPYPAG 71
VN AIYPYGQ Q LPS+ GYT V GYAMPGH +QF G++VNA++ + IPT QAPYP G
Sbjct: 195 VNTAIYPYGQLGQTLPSSHGYTTVQGYAMPGHQFMQFGGSSVNAISTSPIPTIQAPYPTG 254
>ref|XP_002300621.1| predicted protein [Populus trichocarpa] gi|222842347|gb|EEE79894.1|
predicted protein [Populus trichocarpa]
Length = 287
Score = 227 bits (578), Expect(2) = 2e-75
Identities = 111/142 (78%), Positives = 119/142 (83%), Gaps = 2/142 (1%)
Frame = -1
Query: 773 DTTYTKVFVGGLAWETQSETMRRYFDQFGDILEAVVITDRITGRSKGYGFVTFRDPEAAK 594
DTTYTKVFVGGLAWETQSETMRRYF+QFGDILEAVVITD+ TGRSKGYGFVTFR+PEAA+
Sbjct: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
Query: 593 RACLDPSPVIDGRRANCNLASLGRPRPPPPY-GHLRAMTPYFASGQSSR-PYIGSPNYHQ 420
RAC DP+P+IDGRRANCNLASLGRPRPP PY G LR PY AS Q+ R Y GS Y Q
Sbjct: 88 RACADPTPMIDGRRANCNLASLGRPRPPQPYVGRLRPAPPYIASVQTPRGTYAGSFGYQQ 147
Query: 419 PVTYNYQQGFAYPQYGYTAYGP 354
PV+Y YQQG Y YGY AYGP
Sbjct: 148 PVSYGYQQGLMYHPYGYAAYGP 169
Score = 82.8 bits (203), Expect(2) = 2e-75
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = -2
Query: 250 VNAAIYPYGQSRQPLPSNQGYTAVHGYAMPGHHVVQFSGANVNALTAAHIPTNQAPYPAG 71
VN +YPYGQ Q +P GYT + GYA+PGHH++QF G VNA+T + +PT QAPYP G
Sbjct: 197 VNTGMYPYGQFGQNVPGGHGYTTMQGYAVPGHHIMQFGGPGVNAMTTSPLPTIQAPYPTG 256
>ref|XP_003522980.1| PREDICTED: RNA-binding protein 24-like [Glycine max]
Length = 286
Score = 237 bits (605), Expect(2) = 9e-75
Identities = 112/141 (79%), Positives = 122/141 (86%), Gaps = 1/141 (0%)
Frame = -1
Query: 773 DTTYTKVFVGGLAWETQSETMRRYFDQFGDILEAVVITDRITGRSKGYGFVTFRDPEAAK 594
DTTYTKVFVGGLAWETQSETMRRYFDQFG+ILEAVVITD+ TGRSKGYGFVTFRDPEAA+
Sbjct: 28 DTTYTKVFVGGLAWETQSETMRRYFDQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 87
Query: 593 RACLDPSPVIDGRRANCNLASLGRPRPPPPYGHLRAMTPYFASGQSSR-PYIGSPNYHQP 417
RAC DPSPVIDGRRANCNLASLGRPRPP PYG +R +PY S Q +R Y+G Y QP
Sbjct: 88 RACADPSPVIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGSLQPARGAYVGGFGYQQP 147
Query: 416 VTYNYQQGFAYPQYGYTAYGP 354
V+Y+YQQG YP YGYT+YGP
Sbjct: 148 VSYSYQQGLVYPPYGYTSYGP 168
Score = 70.5 bits (171), Expect(2) = 9e-75
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = -2
Query: 238 IYPYGQSRQPLPSNQGYTAVHGYAMPGHHVVQFSGANVNALTAAHIPTNQAPYPAG 71
IYPYGQ Q + S GY+A+ GY +PGH +V + G+NVNA+T + +P QA YP+G
Sbjct: 200 IYPYGQVGQAITSGHGYSAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASYPSG 255
>ref|XP_002307819.1| predicted protein [Populus trichocarpa] gi|222857268|gb|EEE94815.1|
predicted protein [Populus trichocarpa]
Length = 286
Score = 228 bits (581), Expect(2) = 3e-74
Identities = 108/141 (76%), Positives = 118/141 (83%), Gaps = 1/141 (0%)
Frame = -1
Query: 773 DTTYTKVFVGGLAWETQSETMRRYFDQFGDILEAVVITDRITGRSKGYGFVTFRDPEAAK 594
DTTYTKVFVGGLAWETQSETMRRYF+QFGDILEAVVITD+ TGRSKGYGFVTFR+P+AA+
Sbjct: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPDAAR 87
Query: 593 RACLDPSPVIDGRRANCNLASLGRPRPPPPYGHLRAMTPYFASGQSSR-PYIGSPNYHQP 417
RAC DP+P+IDGRRANCNLASLGRPRPP PYG R PY S Q+ R Y+GS Y QP
Sbjct: 88 RACADPTPIIDGRRANCNLASLGRPRPPLPYGRPRPAAPYITSVQTPRGTYVGSFGYQQP 147
Query: 416 VTYNYQQGFAYPQYGYTAYGP 354
V+Y YQQG Y YGY AYGP
Sbjct: 148 VSYGYQQGLMYNPYGYAAYGP 168
Score = 78.2 bits (191), Expect(2) = 3e-74
Identities = 33/60 (55%), Positives = 44/60 (73%)
Frame = -2
Query: 250 VNAAIYPYGQSRQPLPSNQGYTAVHGYAMPGHHVVQFSGANVNALTAAHIPTNQAPYPAG 71
VN+ +YPYGQ Q +P GYT++ GYA+PGH +VQF G +VNA+T + +PT QAPY G
Sbjct: 196 VNSGMYPYGQLSQNVPGGHGYTSMPGYAVPGHQIVQFGGPSVNAITTSSMPTIQAPYHTG 255
>ref|XP_003527630.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Glycine
max]
Length = 293
Score = 224 bits (571), Expect(2) = 5e-73
Identities = 111/149 (74%), Positives = 121/149 (81%), Gaps = 9/149 (6%)
Frame = -1
Query: 773 DTTYTKVFVGGLAWETQSETMRRYFDQFGDILEAVVITDRITGRSKGYGFVTFRDPEAAK 594
DTTYTKVFVGGLAWETQSETMRRYFDQFG+ILEAVVITD+ TGRSKGYGFVTFRDPEAA+
Sbjct: 28 DTTYTKVFVGGLAWETQSETMRRYFDQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 87
Query: 593 RACLDPSPVIDGRRANCNLASLGRPRPPPPYG-------HLRAMTPYFASGQSSR-PYIG 438
RAC DP+PVIDGRRANCNLASLGRPRPP PYG +R +PY S Q +R Y+G
Sbjct: 88 RACADPTPVIDGRRANCNLASLGRPRPPLPYGIVLCLIRRIRPASPYVGSLQPARGAYVG 147
Query: 437 SPNY-HQPVTYNYQQGFAYPQYGYTAYGP 354
Y QPV+Y+YQQG YP YGYT YGP
Sbjct: 148 GFGYQQQPVSYSYQQGLVYPPYGYTTYGP 176
Score = 77.8 bits (190), Expect(2) = 5e-73
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = -2
Query: 250 VNAAIYPYGQSRQPLPSNQGYTAVHGYAMPGHHVVQFSGANVNALTAAHIPTNQAPYPAG 71
VN +YPYGQ Q +PS GY+A+ GY +PGH +V + G+NVNA+T + +P QA YP+G
Sbjct: 203 VNTTVYPYGQVGQAIPSGHGYSAIQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASYPSG 262