BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007662
         (928 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloropla...   343   4e-92
ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloropla...   332   8e-89
ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus c...   324   2e-86
ref|XP_002300047.1| peptide deformylase [Populus trichocarpa] gi...   321   2e-85
ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solan...   305   1e-80

>ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera]
           gi|296087647|emb|CBI34903.3| unnamed protein product
           [Vitis vinifera]
          Length = 275

 Score =  343 bits (879), Expect = 4e-92
 Identities = 179/276 (64%), Positives = 209/276 (75%), Gaps = 10/276 (3%)
 Frame = -1

Query: 925 MARAIFLQQSSLSNKLLPPFSHHASFPRRLSHRHLF----------SHTLLISLKTMALA 776
           MA A  L  S LSN  LP   H ++     SH H F          +   L  ++    A
Sbjct: 1   MAFASCLHSSYLSNTFLPILRHRSALSTSTSHLHRFCSPSRFFSSANRFRLPLMQVQVQA 60

Query: 775 KRTFSSSKKEPLASSCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDIMY 596
           KR FS  K+E +AS  DL F++PLKIVEYPDPILRA NK I TFD+N++KLV EMFD+MY
Sbjct: 61  KRGFSF-KEEVIASPADLSFEAPLKIVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMY 119

Query: 595 KTDGIGVSAPQVGINVRLMVFNEAGERGVGEEIVLINPRIYMYSKKIVVFNEGCLSFPGI 416
           KTDGIG+SAPQVGINV+LMVFN  GERG GEEIVL+NPR+  YSKKIV+FNEGCLSFPGI
Sbjct: 120 KTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGCLSFPGI 179

Query: 415 YADVKRPESVKVDAQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTEQVLDSISA 236
           YADV+RPESVK+DA+DITGA+F  NLSGL ARVFQHEFDHLQGTLFFDRMTE+VLDSI A
Sbjct: 180 YADVERPESVKIDARDITGARFMINLSGLPARVFQHEFDHLQGTLFFDRMTEEVLDSIHA 239

Query: 235 ELQALEKKFEDVTGLPSPENVNSHIRKRVVAGFGRS 128
            LQ LE+K+ED TG PSPE + +  R++V AGFG+S
Sbjct: 240 NLQDLERKYEDRTGFPSPERIETRKRRKVAAGFGKS 275


>ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Cucumis
           sativus]
          Length = 273

 Score =  332 bits (851), Expect = 8e-89
 Identities = 176/266 (66%), Positives = 214/266 (80%), Gaps = 10/266 (3%)
 Frame = -1

Query: 895 SLSNKLLPPFSHHASFP---RRLSHRH----LFSHTLLI---SLKTMALAKRTFSSSKKE 746
           SL + LLP  S   S P   RRLS       LFSH+      S    A AKR FS+ K++
Sbjct: 10  SLPHALLPTVSCWLSPPAVFRRLSGFSSTCKLFSHSSKFKAPSTLVYAQAKRGFSA-KED 68

Query: 745 PLASSCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDIMYKTDGIGVSAP 566
            +ASS DL F++PLKIVEYPDPILRA NKRIG+FD+N++KLV+EMFD+MYKTDGIG+SAP
Sbjct: 69  DVASSVDLEFEAPLKIVEYPDPILRAKNKRIGSFDDNLKKLVQEMFDVMYKTDGIGLSAP 128

Query: 565 QVGINVRLMVFNEAGERGVGEEIVLINPRIYMYSKKIVVFNEGCLSFPGIYADVKRPESV 386
           QVG+NV+LMVFN  GERG GEEIVL+NP++Y YSKK V+FNEGCLSFP IYADV+RPES+
Sbjct: 129 QVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPMIYADVERPESI 188

Query: 385 KVDAQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTEQVLDSISAELQALEKKFE 206
           K+DA+DI+G +F  NLSGLSARVFQHEFDHLQGTLFFDRMT++VL++I  +LQALEKK+E
Sbjct: 189 KIDARDISGTRFMVNLSGLSARVFQHEFDHLQGTLFFDRMTDEVLETIRPQLQALEKKYE 248

Query: 205 DVTGLPSPENVNSHIRKRVVAGFGRS 128
           D TGLPSPE +  + R++V AGFG+S
Sbjct: 249 DRTGLPSPERI-ENFRRKVGAGFGKS 273


>ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
           gi|223539350|gb|EEF40941.1| polypeptide deformylase,
           putative [Ricinus communis]
          Length = 282

 Score =  324 bits (831), Expect = 2e-86
 Identities = 162/224 (72%), Positives = 187/224 (83%)
 Frame = -1

Query: 799 SLKTMALAKRTFSSSKKEPLASSCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLV 620
           S+   A AKR+FS  K+E +A+  DL F+ PLKIVEYPDPILR  NKRI TFD+N++KLV
Sbjct: 60  SIPVRAQAKRSFSF-KEEEIATPADLCFEEPLKIVEYPDPILRRKNKRIDTFDDNLKKLV 118

Query: 619 REMFDIMYKTDGIGVSAPQVGINVRLMVFNEAGERGVGEEIVLINPRIYMYSKKIVVFNE 440
            EMFD+MYKTDGIG+SAPQVGINV+LMVFN  GERG GEEIVLINPR+  YSKKIV FNE
Sbjct: 119 DEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLINPRLNKYSKKIVPFNE 178

Query: 439 GCLSFPGIYADVKRPESVKVDAQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTE 260
           GCLSFPGIYADV RPESVK+DA+DI GA+FT NLSGL ARVFQHE+DHL+G LFFDRMT+
Sbjct: 179 GCLSFPGIYADVLRPESVKIDARDINGARFTVNLSGLPARVFQHEYDHLEGILFFDRMTD 238

Query: 259 QVLDSISAELQALEKKFEDVTGLPSPENVNSHIRKRVVAGFGRS 128
           +VLDSI A+LQALEKKFED TG  SPE + +   K+  AGFG+S
Sbjct: 239 EVLDSIRAQLQALEKKFEDKTGYASPEKIETRKTKKAAAGFGKS 282


>ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
           gi|222847305|gb|EEE84852.1| peptide deformylase [Populus
           trichocarpa]
          Length = 258

 Score =  321 bits (822), Expect = 2e-85
 Identities = 171/262 (65%), Positives = 203/262 (77%), Gaps = 8/262 (3%)
 Frame = -1

Query: 892 LSNKLLPPFSHHASF----PRRLSHRHLFSHTLLI----SLKTMALAKRTFSSSKKEPLA 737
           LS  LL P+ H  +     P RL+    FS T+      SL   + AKR     K++ +A
Sbjct: 1   LSRALLLPYLHSRTQTLCEPIRLAR---FSSTMKQPRPPSLFVRSQAKRG-PFLKQDQVA 56

Query: 736 SSCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDIMYKTDGIGVSAPQVG 557
           ++ DL F++PLKIVEYPDPILRA NKRI +FD+N++KLV EMFD+MYKTDGIG+SAPQVG
Sbjct: 57  ATSDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVG 116

Query: 556 INVRLMVFNEAGERGVGEEIVLINPRIYMYSKKIVVFNEGCLSFPGIYADVKRPESVKVD 377
           INV+LMVFN A E G G+EIVL+NPR+  YSKK V+FNEGCLSFPGIYADVKRPESVK+D
Sbjct: 117 INVQLMVFNPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKID 176

Query: 376 AQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTEQVLDSISAELQALEKKFEDVT 197
           A+DI GA+FT NLSGL ARVFQHEFDHLQG LFFDRMTE+VLDSI   LQALEKK+ED T
Sbjct: 177 ARDINGARFTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEKKYEDKT 236

Query: 196 GLPSPENVNSHIRKRVVAGFGR 131
           G PSPE + +H  K+V AGFG+
Sbjct: 237 GFPSPERIETHRLKKVAAGFGK 258


>ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solanum lycopersicum]
           gi|17433052|sp|Q9FV54.1|DEF1B_SOLLC RecName:
           Full=Peptide deformylase 1B, chloroplastic; Short=PDF
           1B; AltName: Full=Polypeptide deformylase; Flags:
           Precursor gi|11320950|gb|AAG33972.1| peptide
           deformylase-like protein [Solanum lycopersicum]
          Length = 279

 Score =  305 bits (781), Expect = 1e-80
 Identities = 164/278 (58%), Positives = 202/278 (72%), Gaps = 12/278 (4%)
 Frame = -1

Query: 925 MARAIFLQQSSLSNKLLPPFSHHASFPRRLS---HRHLFSHTLLIS--------LKTMAL 779
           MA A +   SS +  L P  S ++S P  +S   HR+  ++ L  S        L   A 
Sbjct: 3   MAAASWASSSSFTRFLRPLLSRNSS-PSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQ 61

Query: 778 AKRTFSSSKK-EPLASSCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDI 602
           A+R  SS  K + +A+  DL F  PLKIVEYPDPILRA NKRI  FD N++KLV EMFDI
Sbjct: 62  ARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDI 121

Query: 601 MYKTDGIGVSAPQVGINVRLMVFNEAGERGVGEEIVLINPRIYMYSKKIVVFNEGCLSFP 422
           MYKTDGIG+SAPQVG+NV+LMVFN AGERG GEEIVL+NPR+  YS++I+ + EGCLSFP
Sbjct: 122 MYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFP 181

Query: 421 GIYADVKRPESVKVDAQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTEQVLDSI 242
            I+ DVKRPESVKVDAQDI G +F  +LS L ARVFQHEFDHLQG LFFD+MT++VLD+I
Sbjct: 182 MIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTI 241

Query: 241 SAELQALEKKFEDVTGLPSPENVNSHIRKRVVAGFGRS 128
             +L ALEKK+ED TGLP+PE++N+   K+   GFG+S
Sbjct: 242 REKLVALEKKYEDRTGLPTPESINTRKIKKAAVGFGKS 279