BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007620
         (1094 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ri...   244   2e-62
ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chlorop...   236   1e-59
ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   236   1e-59
ref|XP_002320231.1| predicted protein [Populus trichocarpa] gi|2...   221   2e-55
ref|NP_171616.1| RNA recognition motif-containing protein [Arabi...   220   4e-55

>ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223545556|gb|EEF47060.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 281

 Score =  244 bits (624), Expect = 2e-62
 Identities = 131/263 (49%), Positives = 176/263 (66%), Gaps = 13/263 (4%)
 Frame = -2

Query: 976 SFPQPAFSCSSISHESPPPAPCLISNTFNRPTT-TNGAFRVFAVAEEQPLSA-------- 824
           S P P FSC   SH      P L S++   P   +   F + A+  E+ + A        
Sbjct: 21  SLPFPKFSCFLQSHSRE--IPLLSSSSSLWPANKSKRVFAILALVNEESVVAEEVDREEN 78

Query: 823 ---SSQEENGSPKPPQVIPCQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTETGIS 653
              S ++E G     Q  PC+LYVCNLPRSCDI++L+++FKPYG V SVE+SRN ETGIS
Sbjct: 79  ENESEEDELGRQLKKQPRPCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGIS 138

Query: 652 KGCGYVTMASIDETIAAVTALDGSDVLGREMRVRLSTDM-TRHKNIQILNSETNKTLIFE 476
           +GCG+VTM SI+    A+ ALDGSD+ GREMRV+ S DM +  +N + L+S   K L +E
Sbjct: 139 RGCGFVTMGSINSAKNAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYE 198

Query: 475 TPHKIYVGNLAWSVKPDFLREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAA 296
           +P K+YVGNLAW+VKP+ LR+ F++FGTVVS RVLYDRK GKNR Y FLSFSS +E +AA
Sbjct: 199 SPFKVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAA 258

Query: 295 MTSDGKELLGRKMLVRKALKSSE 227
           ++ +GK+  GR ++VRK ++  +
Sbjct: 259 LSFNGKDFRGRILVVRKGVERED 281


>ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 284

 Score =  236 bits (601), Expect = 1e-59
 Identities = 113/186 (60%), Positives = 148/186 (79%), Gaps = 1/186 (0%)
 Frame = -2

Query: 778 PCQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTETGISKGCGYVTMASIDETIAAV 599
           PC+LYVCNLPRSCDI++L++MFKPYG V + E+SRN ETGISKGCGYVTM SI+    ++
Sbjct: 99  PCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI 158

Query: 598 TALDGSDVLGREMRVRLSTDM-TRHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDF 422
           TALDGSDV GREMRVR + DM ++ +N+  L+S   K +I+E+P+K+YVGNL+W VKP  
Sbjct: 159 TALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGD 218

Query: 421 LREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKA 242
           LR  F++FGTVVS +VL DR+ GK+RVY FLSFSSA E +A+++ DG E   RK++VR+ 
Sbjct: 219 LRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREG 278

Query: 241 LKSSES 224
           L+ SES
Sbjct: 279 LERSES 284


>ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 286

 Score =  236 bits (601), Expect = 1e-59
 Identities = 113/186 (60%), Positives = 148/186 (79%), Gaps = 1/186 (0%)
 Frame = -2

Query: 778 PCQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTETGISKGCGYVTMASIDETIAAV 599
           PC+LYVCNLPRSCDI++L++MFKPYG V + E+SRN ETGISKGCGYVTM SI+    ++
Sbjct: 101 PCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI 160

Query: 598 TALDGSDVLGREMRVRLSTDM-TRHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDF 422
           TALDGSDV GREMRVR + DM ++ +N+  L+S   K +I+E+P+K+YVGNL+W VKP  
Sbjct: 161 TALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGD 220

Query: 421 LREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKA 242
           LR  F++FGTVVS +VL DR+ GK+RVY FLSFSSA E +A+++ DG E   RK++VR+ 
Sbjct: 221 LRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREG 280

Query: 241 LKSSES 224
           L+ SES
Sbjct: 281 LERSES 286


>ref|XP_002320231.1| predicted protein [Populus trichocarpa] gi|222861004|gb|EEE98546.1|
           predicted protein [Populus trichocarpa]
          Length = 287

 Score =  221 bits (563), Expect = 2e-55
 Identities = 125/268 (46%), Positives = 169/268 (63%), Gaps = 13/268 (4%)
 Frame = -2

Query: 988 LSSVSFPQPAFSCSSISHESPP-----PAPCLISNTFNRPTTTNGAF-RVFAVAEEQPLS 827
           L + + P PA + +SIS   PP     P  C   +  N     +  F  V AV +++ + 
Sbjct: 19  LKTKTRPPPA-AAASISSFCPPIQLQHPKLCCSLSLSNTLCLRSRKFLAVLAVVDKETVI 77

Query: 826 ASS------QEENGSPKPPQVIPCQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTE 665
                    + ++   K  Q  PC+LYVCNLPRS DI+ L++MFKP+G+V SVE+SRN E
Sbjct: 78  TEEINHVREEIDDFELKKKQAKPCELYVCNLPRSSDIADLVEMFKPFGSVLSVEVSRNPE 137

Query: 664 TGISKGCGYVTMASIDETIAAVTALDGSDVLGREMRVRLSTDMTR-HKNIQILNSETNKT 488
           TG+S+GCGY+TM S++    AV+ALDGSDV GREMRVR S +++   +N + LNS   K 
Sbjct: 138 TGVSRGCGYITMGSVESARNAVSALDGSDVGGREMRVRYSVEISSGRRNPEALNSAPTKH 197

Query: 487 LIFETPHKIYVGNLAWSVKPDFLREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQE 308
           L +E+PHK+YVGNL WS KPD LR  F  FG VVS RVL DRK GKNR YAFLSF S  E
Sbjct: 198 LFYESPHKLYVGNLPWSTKPDELRNLFNHFGIVVSARVLSDRKGGKNRTYAFLSFLSDAE 257

Query: 307 FEAAMTSDGKELLGRKMLVRKALKSSES 224
            +AA++ +G E   R ++V++ ++   S
Sbjct: 258 RDAALSMNGTEFYDRMLVVKRGVEKRPS 285


>ref|NP_171616.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7
           [Arabidopsis thaliana] gi|21554268|gb|AAM63343.1|
           ribonucleoprotein, putative [Arabidopsis thaliana]
           gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7
           [Arabidopsis thaliana] gi|332189110|gb|AEE27231.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 293

 Score =  220 bits (561), Expect = 4e-55
 Identities = 110/209 (52%), Positives = 153/209 (73%), Gaps = 2/209 (0%)
 Frame = -2

Query: 844 EEQPLSASSQEENGSPKPPQVIPCQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTE 665
           E +P   S   +    K P+  PC+LYVCN+PRS DI+QLLDMF+P+G V SVE+SRN +
Sbjct: 87  EAEPNKDSVVSKAEPVKKPR--PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQ 144

Query: 664 TGISKGCGYVTMASIDETIAAVTALDGSDVLGREMRVRLSTDMT--RHKNIQILNSETNK 491
           TG S+G GYVTM SI+    A+ +LDG++V GREMRVR S DM     +N ++LNS   K
Sbjct: 145 TGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKK 204

Query: 490 TLIFETPHKIYVGNLAWSVKPDFLREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQ 311
            L++E+ HK+YVGNL W  +PD LR  F++FGT+VS RVL+DRK G+NRV+AFLSF+S +
Sbjct: 205 ILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGE 264

Query: 310 EFEAAMTSDGKELLGRKMLVRKALKSSES 224
           E +AA++ +G +  GR+++VR+ ++ SES
Sbjct: 265 ERDAALSFNGTQYEGRRIIVREGIEKSES 293