BLASTX nr result

ID: Coptis23_contig00007551 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007551
         (252 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002883343.1| predicted protein [Arabidopsis lyrata subsp....    74   1e-11

>ref|XP_002883343.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329183|gb|EFH59602.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 85

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 40/65 (61%), Positives = 46/65 (70%)
 Frame = +2

Query: 56  PATKGYMP*AGHLNPGGKAFPQSMRTSRAIGMIILMLRSLALIVVQRQRAASKSASPPST 235
           P TK  M    HL PGG  FPQS R+SRA+G I  MLRSL+L+VV RQ AAS+S+ PP T
Sbjct: 15  PITKEIMR---HLKPGGGVFPQSRRSSRAMGRIRSMLRSLSLMVVHRQTAASRSSKPPKT 71

Query: 236 GQHVS 250
           GQH S
Sbjct: 72  GQHSS 76


Top