BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007418
         (489 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containi...   167   6e-40
ref|XP_002530010.1| pentatricopeptide repeat-containing protein,...   154   9e-36
ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|2...   147   9e-34
ref|NP_197038.1| pentatricopeptide repeat-containing protein [Ar...   131   7e-29
ref|XP_002873720.1| pentatricopeptide repeat-containing protein ...   130   1e-28

>ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  167 bits (424), Expect = 6e-40
 Identities = 81/159 (50%), Positives = 109/159 (68%)
 Frame = -3

Query: 487 TLSHYYRSLLRTYARQTSLLKAQKLHATLVKNGLASSPSTYLRNALLHLYATCNIPISAQ 308
           ++S +YR LLR+ AR++SL   ++LHAT++  G+A +P T+L NALL  YA+C     A+
Sbjct: 11  SVSRHYRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQAR 70

Query: 307 KLFDEIPNMHMDTVDWTTLMSCYVRNGLPDKALFLFRVMQDENVDIDEVTFVSVFAACAK 128
           K+FDEIP+ H DTVDWTTLM C+VR+ + D+AL +F  M+   V  DEVT V +F  CA+
Sbjct: 71  KVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCAR 130

Query: 127 VGDVKCGMHGHGWMIKRGLPFIVSVSNAVMDMYVKCGRM 11
           +GDV  G  GHG M+K GL  +    NAVMDMY K G M
Sbjct: 131 LGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLM 169



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
 Frame = -3

Query: 304 LFDEIPNMHMDTVDWTTLMSCYVRNGLPDKALFLFRVMQ-DENVDIDEVTFVSVFAACAK 128
           +FDE+P  +   V WT +++ Y+ +GL  ++  L R M  D  ++++ VT  S+  AC++
Sbjct: 206 VFDEMPERN--EVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQ 263

Query: 127 VGDVKCGMHGHGWMIK-RGLPFIVSVSNAVMDMYVKCGRM 11
            GD+  G   H + +K +     + V  A++DMY KCGR+
Sbjct: 264 SGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRI 303


>ref|XP_002530010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530489|gb|EEF32372.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 487

 Score =  154 bits (388), Expect = 9e-36
 Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
 Frame = -3

Query: 481 SHYYRSLLRTYARQTSLLKAQKLHATLVKNGLASSPSTYLRNALLHLYATCNIPISAQKL 302
           S + RSLLR+ AR++SL   +KLHA L+  G+A+SP+ +L NALLHLY+ C I   A  L
Sbjct: 24  SRHLRSLLRSCARESSLSTGKKLHAILLTTGVATSPNAFLLNALLHLYSQCGITRYAHHL 83

Query: 301 FDEIPNMHMDTVDWTTLMSCYVRN-GLPDKALFLFRVMQDENVDIDEVTFVSVFAACAKV 125
           FD+IPN H DT DWT+L+SC  ++   P  A  LF  M+   V +D+V FV VF+ CA+V
Sbjct: 84  FDQIPNSHKDTADWTSLLSCLAKHTSTPRNAFSLFEEMRKRGVILDDVAFVCVFSLCARV 143

Query: 124 GDVKCGMHGHGWMIKRGLPFIVSVSNAVMDMYVKCGRM 11
           G+++ G   HG ++K G    V V NAVM++YVKC  M
Sbjct: 144 GNLEMGRQAHGCVVKMGFGINVKVCNAVMNVYVKCRLM 181



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
 Frame = -3

Query: 304 LFDEIPNMHMDTVDWTTLMSCYVRNGLPDKA-LFLFRVMQDENVDIDEVTFVSVFAACAK 128
           +FD++P  +   V WT ++S YV +G   +  L L  ++    ++++ VT  S+ +ACA+
Sbjct: 218 VFDQMPERN--EVGWTIMISGYVGSGFCKEGFLLLSEMVLGLRLELNYVTLCSILSACAQ 275

Query: 127 VGDVKCGMHGHGWMIKR-GLPFIVSVSNAVMDMYVKCGRMK 8
            GDV  G   H + +K+ G    + V  A++DMY KCGR+K
Sbjct: 276 SGDVVMGRWVHVYALKKMGREIDMMVGTALIDMYAKCGRIK 316


>ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|222867076|gb|EEF04207.1|
           predicted protein [Populus trichocarpa]
          Length = 636

 Score =  147 bits (371), Expect = 9e-34
 Identities = 74/158 (46%), Positives = 106/158 (67%), Gaps = 2/158 (1%)
 Frame = -3

Query: 472 YRSLLRTYARQTSLLKAQKLHATLVKNGLASS-PSTYLRNALLHLYATCNIPISAQKLFD 296
           +RSLLR+ AR +SL   +KLHA ++ +GLASS P+T+L NAL HLYA+C +  SA+ LF 
Sbjct: 18  FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFY 77

Query: 295 EIPNMHMDTVDWTTLMSCYVRNGL-PDKALFLFRVMQDENVDIDEVTFVSVFAACAKVGD 119
           +IP  H D  DWTTL++  V++G  P +  F F+ M+ E V +D+V  +SVF  C +V D
Sbjct: 78  QIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVED 137

Query: 118 VKCGMHGHGWMIKRGLPFIVSVSNAVMDMYVKCGRMKD 5
           +  G    G ++K GL   V V NA+M+MYVKCG +++
Sbjct: 138 LGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEE 175



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
 Frame = -3

Query: 304 LFDEIPNMHMDTVDWTTLMSCYVRNGLPDKA-LFLFRVMQDENVDIDEVTFVSVFAACAK 128
           +FDE+P  +   V WT +++ YV NG   +  L L  ++    + ++ VT  S+ +ACA+
Sbjct: 210 VFDEMPERN--EVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQ 267

Query: 127 VGDVKCGMHGHGWMIK-RGLPFIVSVSNAVMDMYVKCG 17
            GDV  G   H + +K  G    + V  A++DMY KCG
Sbjct: 268 SGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCG 305


>ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
           gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis
           thaliana] gi|332004768|gb|AED92151.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  131 bits (329), Expect = 7e-29
 Identities = 69/155 (44%), Positives = 96/155 (61%)
 Frame = -3

Query: 469 RSLLRTYARQTSLLKAQKLHATLVKNGLASSPSTYLRNALLHLYATCNIPISAQKLFDEI 290
           R LLR  A ++ L   ++LHA L  +GL  +P +YL NAL   YA+    ++AQKLFDEI
Sbjct: 10  RLLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEI 69

Query: 289 PNMHMDTVDWTTLMSCYVRNGLPDKALFLFRVMQDENVDIDEVTFVSVFAACAKVGDVKC 110
           P    D VDWTTL+S + R GL   ++ LF  M+ + V+ID+V+ V +F  CAK+ D+  
Sbjct: 70  PLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGF 129

Query: 109 GMHGHGWMIKRGLPFIVSVSNAVMDMYVKCGRMKD 5
              GHG  +K G+   V V NA+MDMY KCG + +
Sbjct: 130 AQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSE 164


>ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297319557|gb|EFH49979.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 623

 Score =  130 bits (327), Expect = 1e-28
 Identities = 70/151 (46%), Positives = 93/151 (61%)
 Frame = -3

Query: 469 RSLLRTYARQTSLLKAQKLHATLVKNGLASSPSTYLRNALLHLYATCNIPISAQKLFDEI 290
           R LLR  A ++ L   ++LHA L  +GL  +P +YL NAL   YA+     +AQKLFDEI
Sbjct: 10  RLLLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEI 69

Query: 289 PNMHMDTVDWTTLMSCYVRNGLPDKALFLFRVMQDENVDIDEVTFVSVFAACAKVGDVKC 110
           P    D VDWTTL+S + R GL   ++ LF  M+ + V+ID V+ V +F  CAK+ D++ 
Sbjct: 70  PLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRF 129

Query: 109 GMHGHGWMIKRGLPFIVSVSNAVMDMYVKCG 17
           G  GHG  +K G    V V NA+MDMY KCG
Sbjct: 130 GEQGHGVAVKMGFLTSVKVCNALMDMYGKCG 160