BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007304
         (925 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282635.1| PREDICTED: putative exosome complex componen...   392   e-107
ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|1...   384   e-104
ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago ...   375   e-102
ref|XP_004138110.1| PREDICTED: putative exosome complex componen...   370   e-100
ref|XP_003518749.1| PREDICTED: putative exosome complex componen...   366   5e-99

>ref|XP_002282635.1| PREDICTED: putative exosome complex component rrp40 [Vitis
           vinifera] gi|297733775|emb|CBI15022.3| unnamed protein
           product [Vitis vinifera]
          Length = 237

 Score =  392 bits (1008), Expect = e-107
 Identities = 197/237 (83%), Positives = 212/237 (89%)
 Frame = -2

Query: 771 MVADSKSAFIDQTVVPGDAVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGNLRFSKPNKY 592
           M  ++ ++F+DQ VVPGD VLDLS M N TIKLG GL QD D I+V KAG LRFSKPNKY
Sbjct: 1   MEDNTPASFVDQLVVPGDVVLDLSKMGNQTIKLGGGLHQDCDAITVTKAGRLRFSKPNKY 60

Query: 591 WVESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFEVG 412
           WVESS KRYVPCVEDTVLGIVVD KADNFLVDIKGP LAFLPVLAFEGG+RRN+PKFE G
Sbjct: 61  WVESSQKRYVPCVEDTVLGIVVDSKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEAG 120

Query: 411 KLLYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEA 232
            LLYVRVVKAN  MNPELSCTD +GKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEA
Sbjct: 121 TLLYVRVVKANTGMNPELSCTDASGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEA 180

Query: 231 LGKKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 61
           LGKKLSFEIAVGLNGRVWVNA SPSTVILV+NAIM SESL+ VQQ+IMV+KL+QR+Q
Sbjct: 181 LGKKLSFEIAVGLNGRVWVNASSPSTVILVANAIMNSESLSVVQQKIMVDKLLQRIQ 237


>ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|118482713|gb|ABK93275.1|
           unknown [Populus trichocarpa]
           gi|222858717|gb|EEE96264.1| predicted protein [Populus
           trichocarpa]
          Length = 242

 Score =  384 bits (987), Expect = e-104
 Identities = 190/233 (81%), Positives = 208/233 (89%)
 Frame = -2

Query: 759 SKSAFIDQTVVPGDAVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGNLRFSKPNKYWVES 580
           S + FID  VVPGD V+DLSSM+N TIKLG GLRQD D ISVMKAG LRFSKPNKYWVE+
Sbjct: 8   SPATFIDNLVVPGDVVVDLSSMTNQTIKLGSGLRQDCDAISVMKAGKLRFSKPNKYWVET 67

Query: 579 SNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFEVGKLLY 400
           S KRYVPC ED+VLGIVVD K+DNFL+DIKGP LAFLPVLAFEGG+RRN+PKFE G LLY
Sbjct: 68  SQKRYVPCAEDSVLGIVVDSKSDNFLIDIKGPALAFLPVLAFEGGTRRNIPKFEAGTLLY 127

Query: 399 VRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALGKK 220
           VRVVKAN  MNPELSCTD +GKAAEFG LKDGYMFE STGLSRMLLSSPTCPVLEALGKK
Sbjct: 128 VRVVKANPGMNPELSCTDASGKAAEFGALKDGYMFECSTGLSRMLLSSPTCPVLEALGKK 187

Query: 219 LSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 61
           LSFEIAVGLNGRVWVNA SPS VI+V+NAIM SE+L+GVQQ+IM EKL+Q++Q
Sbjct: 188 LSFEIAVGLNGRVWVNANSPSIVIIVANAIMNSETLSGVQQKIMAEKLLQKIQ 240


>ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago truncatula]
           gi|217074508|gb|ACJ85614.1| unknown [Medicago
           truncatula] gi|355515294|gb|AES96917.1| Exosome complex
           exonuclease RRP40 [Medicago truncatula]
           gi|388510130|gb|AFK43131.1| unknown [Medicago
           truncatula]
          Length = 240

 Score =  375 bits (964), Expect = e-102
 Identities = 186/235 (79%), Positives = 208/235 (88%)
 Frame = -2

Query: 765 ADSKSAFIDQTVVPGDAVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGNLRFSKPNKYWV 586
           A S + F+DQ V PGD VLDLS+M+N TIKLG GLRQDGDVISVMKAG LRFSKPNKYWV
Sbjct: 6   AGSSTNFVDQLVYPGDVVLDLSTMTNQTIKLGGGLRQDGDVISVMKAGRLRFSKPNKYWV 65

Query: 585 ESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFEVGKL 406
           ESS KRYVP  ED+VLGI+VD ++DNFLVDIKGPTLAFLPVLAFEGG+RRN+PKFEVG L
Sbjct: 66  ESSQKRYVPHAEDSVLGIIVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGAL 125

Query: 405 LYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALG 226
           +YVRVVKA   MNPELSCTD +GKA EFG LK+GYMFE STGLSRMLLS+PTCPVL+ LG
Sbjct: 126 IYVRVVKAIPGMNPELSCTDASGKAGEFGALKEGYMFECSTGLSRMLLSTPTCPVLDTLG 185

Query: 225 KKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 61
           KKLSFEIAVGLNGRVWVNA SPST I+V+NA++ SE L+GVQQ+IM EKL+QRVQ
Sbjct: 186 KKLSFEIAVGLNGRVWVNASSPSTTIIVANALINSEVLSGVQQKIMAEKLLQRVQ 240


>ref|XP_004138110.1| PREDICTED: putative exosome complex component rrp40-like [Cucumis
           sativus] gi|449477413|ref|XP_004155016.1| PREDICTED:
           putative exosome complex component rrp40-like [Cucumis
           sativus]
          Length = 243

 Score =  370 bits (949), Expect = e-100
 Identities = 183/239 (76%), Positives = 207/239 (86%)
 Frame = -2

Query: 777 VRMVADSKSAFIDQTVVPGDAVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGNLRFSKPN 598
           V   + S S  +DQ VVPGD VLDLS+M+N TIKLG GLRQD D ISV K G LRFSKPN
Sbjct: 2   VEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPN 61

Query: 597 KYWVESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFE 418
           KYWVESS KRYVPC ED VLGIV+D +ADNFLVDIKGP+LAFLPVLAFEGG+RRN+PKFE
Sbjct: 62  KYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFE 121

Query: 417 VGKLLYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVL 238
           +G LLYVRVVK N  MNPEL+CTD +GKAA FG LKDGYMFE STGLSRMLLSSP+CPVL
Sbjct: 122 MGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVL 181

Query: 237 EALGKKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 61
           E+LGKKLSFE AVGLNGRVWVNA+SPST+I+VSNAI+ SE+L+GVQQRIMV+KL+  ++
Sbjct: 182 ESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240


>ref|XP_003518749.1| PREDICTED: putative exosome complex component rrp40-like [Glycine
           max]
          Length = 240

 Score =  366 bits (939), Expect = 5e-99
 Identities = 178/234 (76%), Positives = 206/234 (88%)
 Frame = -2

Query: 765 ADSKSAFIDQTVVPGDAVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGNLRFSKPNKYWV 586
           + S +  +DQ+V PGD +LDLS+M+N TIKLG GLRQD D ISVMKAG LRFSKPNKYWV
Sbjct: 6   SSSSTNLVDQSVCPGDVILDLSNMTNQTIKLGGGLRQDCDAISVMKAGRLRFSKPNKYWV 65

Query: 585 ESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFEVGKL 406
           E+S KRYVP  ED+VLGIVVD ++DNFLVDIKGP LAFLPVLAFEGG+RRN+P+FE+G L
Sbjct: 66  ENSQKRYVPHAEDSVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPRFEIGTL 125

Query: 405 LYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALG 226
           +Y RVVKAN  MNPEL+CTD +GKAAEFG LKDGYMFE +TGLSRMLLSSPTCPVL+ALG
Sbjct: 126 IYARVVKANPGMNPELACTDASGKAAEFGALKDGYMFECTTGLSRMLLSSPTCPVLDALG 185

Query: 225 KKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRV 64
           KKLSFEIAVGLNGRVWV+A SP T I+V+NAIM SE+L+G QQRIMVEKL++R+
Sbjct: 186 KKLSFEIAVGLNGRVWVSAASPQTTIVVANAIMNSETLSGAQQRIMVEKLLERI 239