BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007244
         (1956 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-like isoform 1...   692   0.0  
ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-like isoform 2...   688   0.0  
emb|CAN75901.1| hypothetical protein VITISV_001968 [Vitis vinifera]   665   0.0  
ref|XP_002525276.1| Chitin-inducible gibberellin-responsive prot...   652   0.0  
dbj|BAF91723.1| putative SHORT-ROOT protein [Ipomoea nil]             643   0.0  

>ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-like isoform 1 [Vitis vinifera]
          Length = 494

 Score =  692 bits (1787), Expect = 0.0
 Identities = 359/507 (70%), Positives = 395/507 (77%)
 Frame = +2

Query: 134  MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEEECSNFFMDEDDFXXXX 313
            MDTLFRLVSLQ                              ++EEC NFFMDE+DF    
Sbjct: 1    MDTLFRLVSLQSDQSYNSSRTSSSSRSSRQNHHHHHQ----EDEECFNFFMDEEDFSSSS 56

Query: 314  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFEPPEFTSFSPAPDLNLEFISSTTS 493
                                              AFEP EF SFSPA DL+LEF SS  +
Sbjct: 57   SKHYYPYQQQTHPSTTTTPTTTNTSTPTHH----AFEPTEF-SFSPARDLHLEFNSS--A 109

Query: 494  STKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQALFSRITDS 673
            S KWAS++LLETARAIADKNS+RVQQLMWMLNELSSPYGDTDQKLA+YFLQALFSR+TDS
Sbjct: 110  SGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDS 169

Query: 674  GERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEAFDGESKLHIID 853
            GERCYRTL SA+EK CSFE TRKMVLKFQEVSPWTTFGHVA NGAI+EA +GESKLHIID
Sbjct: 170  GERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEALEGESKLHIID 229

Query: 854  ISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKAGGPTSGVTAVHKVMKEIGNRMEKF 1033
            ISNTYCTQWPTLLEALATRTDETPHLRLTTVVT+KAG  T G+  V K+MKEIGNRMEKF
Sbjct: 230  ISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAG--TGGMAPVQKLMKEIGNRMEKF 287

Query: 1034 ARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSVGVTGNRRDVVLSAF 1213
            ARLMGVPFKFNV+HH GDLS LNL++LDIKDDEALAVNC+  LHSV   GNRRD+V+S+F
Sbjct: 288  ARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGALHSVTAFGNRRDIVVSSF 347

Query: 1214 HRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRLYFESLDESFPRTSNERLMLER 1393
             RL P+I+TVVEEEADLDVGVDGF+FVKGFQECL+WFR+Y ESLDESFPRTSNERLMLER
Sbjct: 348  RRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLESLDESFPRTSNERLMLER 407

Query: 1394 AAGKALVDLVACQPSESNERRESATRWVNRLRTAGFSSFPYSDDVADDVRALLRRYKEGW 1573
            AAG+A+VDLVAC PSES ERRE+ATRW  RL  +GFS   +SD+V DDVRALLRRYKEGW
Sbjct: 408  AAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFSDEVCDDVRALLRRYKEGW 467

Query: 1574 SMIPCSDAGVFLAWKDQPVVWACAWKP 1654
            SM   SDAG+FL+WKDQPVVW  AWKP
Sbjct: 468  SMTQSSDAGIFLSWKDQPVVWTSAWKP 494


>ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-like isoform 2 [Vitis vinifera]
          Length = 509

 Score =  688 bits (1776), Expect = 0.0
 Identities = 359/518 (69%), Positives = 395/518 (76%), Gaps = 11/518 (2%)
 Frame = +2

Query: 134  MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEEECSNFFMDEDDFXXXX 313
            MDTLFRLVSLQ                              ++EEC NFFMDE+DF    
Sbjct: 1    MDTLFRLVSLQSDQSYNSSRTSSSSRSSRQNHHHHHQ----EDEECFNFFMDEEDFSSSS 56

Query: 314  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------AFEPPEFTSFSPAPD 460
                                                         AFEP EF SFSPA D
Sbjct: 57   SKHYYPYQQQTHPSTTTTPTTTNTQTHPSTTTTPTTTNTSTPTHHAFEPTEF-SFSPARD 115

Query: 461  LNLEFISSTTSSTKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYF 640
            L+LEF SS  +S KWAS++LLETARAIADKNS+RVQQLMWMLNELSSPYGDTDQKLA+YF
Sbjct: 116  LHLEFNSS--ASGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTDQKLAAYF 173

Query: 641  LQALFSRITDSGERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEA 820
            LQALFSR+TDSGERCYRTL SA+EK CSFE TRKMVLKFQEVSPWTTFGHVA NGAI+EA
Sbjct: 174  LQALFSRMTDSGERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEA 233

Query: 821  FDGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKAGGPTSGVTAVHKV 1000
             +GESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVT+KAG  T G+  V K+
Sbjct: 234  LEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAG--TGGMAPVQKL 291

Query: 1001 MKEIGNRMEKFARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSVGVT 1180
            MKEIGNRMEKFARLMGVPFKFNV+HH GDLS LNL++LDIKDDEALAVNC+  LHSV   
Sbjct: 292  MKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGALHSVTAF 351

Query: 1181 GNRRDVVLSAFHRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRLYFESLDESFP 1360
            GNRRD+V+S+F RL P+I+TVVEEEADLDVGVDGF+FVKGFQECL+WFR+Y ESLDESFP
Sbjct: 352  GNRRDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLESLDESFP 411

Query: 1361 RTSNERLMLERAAGKALVDLVACQPSESNERRESATRWVNRLRTAGFSSFPYSDDVADDV 1540
            RTSNERLMLERAAG+A+VDLVAC PSES ERRE+ATRW  RL  +GFS   +SD+V DDV
Sbjct: 412  RTSNERLMLERAAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFSDEVCDDV 471

Query: 1541 RALLRRYKEGWSMIPCSDAGVFLAWKDQPVVWACAWKP 1654
            RALLRRYKEGWSM   SDAG+FL+WKDQPVVW  AWKP
Sbjct: 472  RALLRRYKEGWSMTQSSDAGIFLSWKDQPVVWTSAWKP 509


>emb|CAN75901.1| hypothetical protein VITISV_001968 [Vitis vinifera]
          Length = 480

 Score =  665 bits (1715), Expect = 0.0
 Identities = 345/507 (68%), Positives = 379/507 (74%)
 Frame = +2

Query: 134  MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEEECSNFFMDEDDFXXXX 313
            MDTLFRLVSLQ                              ++EEC NFFMDE+DF    
Sbjct: 1    MDTLFRLVSLQSDQSYNSSRTSSSSRSSRQNHHHHHQ----EDEECFNFFMDEEDFSSSS 56

Query: 314  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFEPPEFTSFSPAPDLNLEFISSTTS 493
                                                 PP   S SP P            
Sbjct: 57   SKHYYPYQQQTHPSSPPPPPPPTPALLLIMP----LSPPN--SLSPLP------------ 98

Query: 494  STKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQALFSRITDS 673
               WAS++LLETARAIADKNS+RVQQLMWMLNELSSPYGDTDQKLA+YFLQALFSR+TDS
Sbjct: 99   ---WASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDS 155

Query: 674  GERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEAFDGESKLHIID 853
            GERCYRTL SA+EK CSFE TRKMVLKFQEVSPWTTFGHVA NGAI+EA +GESKLHIID
Sbjct: 156  GERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEALEGESKLHIID 215

Query: 854  ISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKAGGPTSGVTAVHKVMKEIGNRMEKF 1033
            ISNTYCTQWPTLLEALATRTDETPHLRLTTVVT+KAG  T G+  V K+MKEIGNRMEKF
Sbjct: 216  ISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAG--TGGMAPVQKLMKEIGNRMEKF 273

Query: 1034 ARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSVGVTGNRRDVVLSAF 1213
            ARLMGVPFKFNV+HH GDLS LNL++LDIKDDEALAVNC+  LHSV   GNRRD+V+S+F
Sbjct: 274  ARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGALHSVTAVGNRRDIVVSSF 333

Query: 1214 HRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRLYFESLDESFPRTSNERLMLER 1393
             RL P+I+TVVEEEADLDVGVDGF+FVKGFQECL+WFR+Y ESLDESFPRTSNERLMLER
Sbjct: 334  RRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLESLDESFPRTSNERLMLER 393

Query: 1394 AAGKALVDLVACQPSESNERRESATRWVNRLRTAGFSSFPYSDDVADDVRALLRRYKEGW 1573
            AAG+A+VDLVAC PSES ERRE+ATRW  RL  +GFS   +SD+V DDVRALLRRYKEGW
Sbjct: 394  AAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFSDEVCDDVRALLRRYKEGW 453

Query: 1574 SMIPCSDAGVFLAWKDQPVVWACAWKP 1654
            SM   SDAG+FL+WKDQPVVW  AWKP
Sbjct: 454  SMTQSSDAGIFLSWKDQPVVWTSAWKP 480


>ref|XP_002525276.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus
            communis] gi|223535434|gb|EEF37104.1| Chitin-inducible
            gibberellin-responsive protein, putative [Ricinus
            communis]
          Length = 512

 Score =  652 bits (1683), Expect = 0.0
 Identities = 333/519 (64%), Positives = 381/519 (73%), Gaps = 12/519 (2%)
 Frame = +2

Query: 134  MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------QEEECSNFFMDED 295
            MDTLFRLVSLQ                                    ++EEC NFFMDE+
Sbjct: 1    MDTLFRLVSLQQQQSDQSFNNSTSRTSSSSRSSRQNNHHHHHHQYQQEDEECFNFFMDEE 60

Query: 296  DFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFEPPEFTSFSPAPDLNLEF 475
            DF                                        E  +  SFSP+ DLN +F
Sbjct: 61   DFSSSSSKHYYPYHHQQQQQHTTATTTTTTVTTPNTTTS-TLESTDHFSFSPSHDLNFDF 119

Query: 476  ISSTTSSTKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQALF 655
                  S++WA+D+LLETARAIADKNS+RVQQLMWMLNEL SPYGD D+KLASYFLQALF
Sbjct: 120  ------SSRWATDILLETARAIADKNSARVQQLMWMLNELGSPYGDIDKKLASYFLQALF 173

Query: 656  SRITDSGERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEAFDGES 835
            SR+TDSGERCYRTL SA++K CSFE TRKMVLKFQEVSPWTTFGHV+ NGAI+EAF+GES
Sbjct: 174  SRMTDSGERCYRTLASASDKTCSFESTRKMVLKFQEVSPWTTFGHVSCNGAIMEAFEGES 233

Query: 836  KLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKA------GGPTSGVTAVHK 997
            KLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTT+V +K       GG   G+ +  K
Sbjct: 234  KLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTIVASKTNGGGGGGGGNCGLVSAQK 293

Query: 998  VMKEIGNRMEKFARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSVGV 1177
            VMKEIG+RMEKFARLMGVPFKFNVIHH GDL +LNLS+LDIK+DEALA+NCI +LHSV  
Sbjct: 294  VMKEIGSRMEKFARLMGVPFKFNVIHHAGDLCDLNLSELDIKEDEALAINCIGSLHSVTT 353

Query: 1178 TGNRRDVVLSAFHRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRLYFESLDESF 1357
              NRRD ++S F RLQP+I+T+VEEEADLDVG+DG +FV+GFQECL+WFR+YFESL+ESF
Sbjct: 354  VANRRDYIISNFRRLQPRIITIVEEEADLDVGIDGLDFVRGFQECLRWFRVYFESLEESF 413

Query: 1358 PRTSNERLMLERAAGKALVDLVACQPSESNERRESATRWVNRLRTAGFSSFPYSDDVADD 1537
             RTSNERLMLER+AG+A+VDLVACQPSES ERRE ATRW +RL   G+S   +SD+V DD
Sbjct: 414  SRTSNERLMLERSAGRAIVDLVACQPSESIERREKATRWSSRLHACGYSPILFSDEVCDD 473

Query: 1538 VRALLRRYKEGWSMIPCSDAGVFLAWKDQPVVWACAWKP 1654
            VRALLRRYKEGWSM     AG+FL WK+QPVVWA AWKP
Sbjct: 474  VRALLRRYKEGWSMTQSGHAGIFLCWKEQPVVWASAWKP 512


>dbj|BAF91723.1| putative SHORT-ROOT protein [Ipomoea nil]
          Length = 505

 Score =  643 bits (1659), Expect = 0.0
 Identities = 329/512 (64%), Positives = 384/512 (75%), Gaps = 5/512 (0%)
 Frame = +2

Query: 134  MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEEECSNFFMDEDDFXXXX 313
            MDTLFRLVSLQ                              ++EEC NFFMDEDDF    
Sbjct: 1    MDTLFRLVSLQQSDQSFNSSRTSSSSRCSRHNNYHHHQ---EDEECFNFFMDEDDFSSSS 57

Query: 314  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFEPPEFTSFSPAPDLNLEFISSTTS 493
                                              +  P  ++   P  D NLEF S+   
Sbjct: 58   SKHPYPPSSSSYHHHHHQYQQFSNTPTPTTTS--STPPHSYSHPQPTFDPNLEFGSAF-- 113

Query: 494  STKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQALFSRITDS 673
            S KWA+++L+ETARA+A+KNS RVQQLMWMLNELSSPYGDTDQKLA+YFLQALFSR+TD+
Sbjct: 114  SGKWATEILVETARAVAEKNSGRVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDT 173

Query: 674  GERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEAFDGESKLHIID 853
            G+R YR+L SA++K CSFE TRKMVLKFQEVSPWTTFGHVA NGAI+EAF+GESKLHI+D
Sbjct: 174  GDRTYRSLVSASDKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEAFEGESKLHIVD 233

Query: 854  ISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKA--GGPTSGVTAVHKVMKEIGNRME 1027
            ISNT+CTQWPTLLEALATRTDETPHLRLTTVV NKA  GG + G  ++ KVMKEIGNRME
Sbjct: 234  ISNTFCTQWPTLLEALATRTDETPHLRLTTVVVNKAFGGGGSGGAASIQKVMKEIGNRME 293

Query: 1028 KFARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSVGVTGNRRDVVLS 1207
            KF RLMGVPFKFNVIHH GDLS+L+LS LDIK+DEALA+N +  LHSV   G+RRD ++S
Sbjct: 294  KFGRLMGVPFKFNVIHHSGDLSDLDLSALDIKEDEALAINSVGALHSVTAVGSRRDYLIS 353

Query: 1208 AFHRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRLYFESLDESFPRTSNERLML 1387
             F RLQP+I+TVVEEEA++DVGV+GF+FV+ FQECL+WFR+YFESLDESFP+TSNERLML
Sbjct: 354  VFRRLQPRILTVVEEEANVDVGVEGFDFVRDFQECLRWFRVYFESLDESFPKTSNERLML 413

Query: 1388 ERAAGKALVDLVACQPSESNERRESATRWVNRLRTAGFSSFPYSDDVADDVRALLRRYKE 1567
            ER AG+A+VDLVAC PS+S ERRE+A RW  RL  AGF+  PYSD+V DDVRALLRRY+E
Sbjct: 414  ERQAGRAIVDLVACPPSQSIERRETAERWSRRLHAAGFTPIPYSDEVCDDVRALLRRYRE 473

Query: 1568 GWSMIPCS---DAGVFLAWKDQPVVWACAWKP 1654
            GW+M PCS    AG+FL+WKDQPVVWA AW+P
Sbjct: 474  GWTMAPCSGDLSAGIFLSWKDQPVVWASAWRP 505