BLASTX nr result

ID: Coptis23_contig00007238 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007238
         (826 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001241344.1| uncharacterized protein LOC100776394 [Glycin...   272   6e-71
ref|NP_001235545.1| uncharacterized protein LOC100527656 [Glycin...   266   4e-69
ref|XP_002276731.2| PREDICTED: protein LSD1 [Vitis vinifera]          266   5e-69
emb|CBI39012.3| unnamed protein product [Vitis vinifera]              266   5e-69
ref|XP_003630013.1| Lsd1-like protein [Medicago truncatula] gi|3...   263   3e-68

>ref|NP_001241344.1| uncharacterized protein LOC100776394 [Glycine max]
           gi|255641264|gb|ACU20909.1| unknown [Glycine max]
          Length = 177

 Score =  272 bits (696), Expect = 6e-71
 Identities = 124/177 (70%), Positives = 144/177 (81%)
 Frame = +1

Query: 214 MQSQLVCSGCRSVLLYPRGAANVCCAICSTITSVPPPGMEMSQIVCGGCRTLLMYSRGAT 393
           MQSQ+VC+GCRS+LLYPRGA NVCCA+C+TITSVPPPGMEMSQ+ CGGCRTLLMY+RGAT
Sbjct: 1   MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60

Query: 394 SVRCSCCHTINLARQASNHLAHVNCGQCTIMLMYPYGAPSVKCAVCNYITTTGVGNMRMP 573
           SVRCSCCHT+NL   ASN +AHV+CG C   LMYPYGAPSVKCA+C++IT     N R+P
Sbjct: 61  SVRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNVSTNNGRLP 120

Query: 574 VPLQRPNGAXXXXXXXXXXXXLPHSYSQTVVVENPMSLDESGKLVSNVVVGVTSEKK 744
           +P+ RPNG             +P S SQTVVVENPMS+D SGKLVSNVVVGVT++KK
Sbjct: 121 IPVHRPNGTTNAGTLPTTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 177


>ref|NP_001235545.1| uncharacterized protein LOC100527656 [Glycine max]
           gi|255632868|gb|ACU16787.1| unknown [Glycine max]
          Length = 175

 Score =  266 bits (680), Expect = 4e-69
 Identities = 124/177 (70%), Positives = 144/177 (81%)
 Frame = +1

Query: 214 MQSQLVCSGCRSVLLYPRGAANVCCAICSTITSVPPPGMEMSQIVCGGCRTLLMYSRGAT 393
           MQSQ+VC+GCRS+LLYPRGA NVCCA+C+TITSV PPGMEMSQ+ CGGCRTLLMY+RGAT
Sbjct: 1   MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVSPPGMEMSQLYCGGCRTLLMYTRGAT 60

Query: 394 SVRCSCCHTINLARQASNHLAHVNCGQCTIMLMYPYGAPSVKCAVCNYITTTGVGNMRMP 573
           SVRCSCCHT+NL   ASN +AHV+CG C   LMYPYGAPSVKCA+C++IT T   N R+P
Sbjct: 61  SVRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNT--NNGRLP 118

Query: 574 VPLQRPNGAXXXXXXXXXXXXLPHSYSQTVVVENPMSLDESGKLVSNVVVGVTSEKK 744
           +P+ RPNG             +P S SQTVVVENPMS+D SGKLVSNVVVGVT++KK
Sbjct: 119 IPVHRPNGTNNAGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 175


>ref|XP_002276731.2| PREDICTED: protein LSD1 [Vitis vinifera]
          Length = 264

 Score =  266 bits (679), Expect = 5e-69
 Identities = 121/177 (68%), Positives = 147/177 (83%)
 Frame = +1

Query: 214 MQSQLVCSGCRSVLLYPRGAANVCCAICSTITSVPPPGMEMSQIVCGGCRTLLMYSRGAT 393
           MQS L+C+GCRS+L+YPRGA NVCCA+C+++TSVPPPG+EM+Q++CGGCRTLLMY+RGAT
Sbjct: 94  MQSHLMCNGCRSILVYPRGATNVCCALCNSVTSVPPPGLEMAQLICGGCRTLLMYTRGAT 153

Query: 394 SVRCSCCHTINLARQASNHLAHVNCGQCTIMLMYPYGAPSVKCAVCNYITTTGVGNMRMP 573
           SVRCSCCHT+NLA   SN +AHVNCG C   LMYPYGAPSVKCAVC+Y+T+ G+ N+R+P
Sbjct: 154 SVRCSCCHTVNLAPAPSNQVAHVNCGNCRTTLMYPYGAPSVKCAVCHYVTSVGMVNVRVP 213

Query: 574 VPLQRPNGAXXXXXXXXXXXXLPHSYSQTVVVENPMSLDESGKLVSNVVVGVTSEKK 744
           +P+ RPN A               S SQTVVV+NPMS+DESGKLVSNVVVGVT+EKK
Sbjct: 214 IPVHRPNAAAISASTPST------SSSQTVVVKNPMSVDESGKLVSNVVVGVTTEKK 264


>emb|CBI39012.3| unnamed protein product [Vitis vinifera]
          Length = 259

 Score =  266 bits (679), Expect = 5e-69
 Identities = 121/177 (68%), Positives = 147/177 (83%)
 Frame = +1

Query: 214 MQSQLVCSGCRSVLLYPRGAANVCCAICSTITSVPPPGMEMSQIVCGGCRTLLMYSRGAT 393
           MQS L+C+GCRS+L+YPRGA NVCCA+C+++TSVPPPG+EM+Q++CGGCRTLLMY+RGAT
Sbjct: 89  MQSHLMCNGCRSILVYPRGATNVCCALCNSVTSVPPPGLEMAQLICGGCRTLLMYTRGAT 148

Query: 394 SVRCSCCHTINLARQASNHLAHVNCGQCTIMLMYPYGAPSVKCAVCNYITTTGVGNMRMP 573
           SVRCSCCHT+NLA   SN +AHVNCG C   LMYPYGAPSVKCAVC+Y+T+ G+ N+R+P
Sbjct: 149 SVRCSCCHTVNLAPAPSNQVAHVNCGNCRTTLMYPYGAPSVKCAVCHYVTSVGMVNVRVP 208

Query: 574 VPLQRPNGAXXXXXXXXXXXXLPHSYSQTVVVENPMSLDESGKLVSNVVVGVTSEKK 744
           +P+ RPN A               S SQTVVV+NPMS+DESGKLVSNVVVGVT+EKK
Sbjct: 209 IPVHRPNAAAISASTPST------SSSQTVVVKNPMSVDESGKLVSNVVVGVTTEKK 259


>ref|XP_003630013.1| Lsd1-like protein [Medicago truncatula] gi|355524035|gb|AET04489.1|
           Lsd1-like protein [Medicago truncatula]
          Length = 223

 Score =  263 bits (673), Expect = 3e-68
 Identities = 123/177 (69%), Positives = 142/177 (80%)
 Frame = +1

Query: 214 MQSQLVCSGCRSVLLYPRGAANVCCAICSTITSVPPPGMEMSQIVCGGCRTLLMYSRGAT 393
           MQSQLVC+GCR+ LLYPRGA NVCCA+C+TIT+VPPPGM+MSQ+ CGGCRTLLMY+RGAT
Sbjct: 48  MQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAT 107

Query: 394 SVRCSCCHTINLARQASNHLAHVNCGQCTIMLMYPYGAPSVKCAVCNYITTTGVGNMRMP 573
           SVRCSCCHT+NLA   SN +AHV CG C   LMYPYGAPSVKCAVC+YIT   + N R+P
Sbjct: 108 SVRCSCCHTVNLA-PVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRLP 166

Query: 574 VPLQRPNGAXXXXXXXXXXXXLPHSYSQTVVVENPMSLDESGKLVSNVVVGVTSEKK 744
           +P  RP+G             +P S SQTVVVENPMS+D SGKLVSNVVVGVT++KK
Sbjct: 167 IPGHRPHGTTDSGMLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 223


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