BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007218
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]    62   5e-08
ref|XP_002866078.1| F-box family protein [Arabidopsis lyrata sub...    57   1e-06
ref|NP_200326.2| uncharacterized protein [Arabidopsis thaliana] ...    57   2e-06
dbj|BAB08584.1| unnamed protein product [Arabidopsis thaliana]         57   2e-06

>emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]
          Length = 1290

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
 Frame = +3

Query: 3    STSYVIMAIYDNYKRLAFFKSGERTWTPVKDFNNVPGLIEDVIYCDDRFYAVDCNGVLFE 182
            S    +M IY +Y RLAF K G +TWT ++   +  G ++D+IY +  F AV+ +  ++ 
Sbjct: 1074 SPDCAVMIIYSDYGRLAFTKPGHQTWTLLE---SESGPVDDIIYFNGSFLAVNLSWEVWI 1130

Query: 183  CHVSHPHPKLLRVAPSIGATLDQPWFSLIKVYLAEASGKVLQVRRQVIDN--------KT 338
            C +S    K +R A +  A  D         YL E+ G++  V R + D         +T
Sbjct: 1131 CDISGSQLKTIRFA-AAPALQDVDEIEYEAKYLVESGGEIYMVTRNLYDTARRDIPYMRT 1189

Query: 339  NRFEVFRLDSVGTKW 383
              F V +LD    +W
Sbjct: 1190 WTFSVLKLDMCNKRW 1204


>ref|XP_002866078.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297311913|gb|EFH42337.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 375

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
 Frame = +3

Query: 12  YVIMAIYDNYKRLAFFKSGERTWTPVKDFNNVPGLIEDVIYCDDRFYAVDCNGVLFECHV 191
           +V++ IY+  ++LAF + G++ WT   D  +V   ++D+++C+  F+A+D  G ++ C +
Sbjct: 166 WVVLVIYNTDRKLAFCRRGDKQWT---DLESVASAVDDIVFCNGVFFAIDRFGEIYHCEL 222

Query: 192 SHPHPKLLRVAPSIGATLDQPWFSLIKVYLAEASGKVLQVRRQVID-----NKTNRFEVF 356
           S   PK + +  S     D       K Y AE+    L V  + ++     +    FE++
Sbjct: 223 SPNSPKAIPLCSSSPFRYDS-----CKKYFAESDYDELWVVLKKLELNDDCDFATSFEIY 277

Query: 357 RLDSVGTKW 383
             +    +W
Sbjct: 278 EFNRETNEW 286


>ref|NP_200326.2| uncharacterized protein [Arabidopsis thaliana]
           gi|142991284|sp|Q9FLP7.2|FB294_ARATH RecName:
           Full=Putative F-box protein At5g55150
           gi|332009209|gb|AED96592.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 360

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/129 (24%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
 Frame = +3

Query: 12  YVIMAIYDNYKRLAFFKSGERTWTPVKDFNNVPGLIEDVIYCDDRFYAVDCNGVLFECHV 191
           +V++ IY+  ++LAF + G++ WT   D  +V   ++D+++C+  F+A+D  G ++ C +
Sbjct: 154 WVVLVIYNTDRKLAFCRRGDKQWT---DLESVASSVDDIVFCNGVFFAIDRLGEIYHCEL 210

Query: 192 SHPHPKLLRVAPSIGATLDQPWFSLIKVYLAEASGKVLQVRRQVID-----NKTNRFEVF 356
           S  +PK   +  +     D       K YLAE+    L V  + ++     +    FE++
Sbjct: 211 SANNPKATPLCSTSPFRYDS-----CKKYLAESDYDELWVVLKKLELNDDCDFETSFEIY 265

Query: 357 RLDSVGTKW 383
             +    +W
Sbjct: 266 EFNRETNEW 274


>dbj|BAB08584.1| unnamed protein product [Arabidopsis thaliana]
          Length = 340

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/129 (24%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
 Frame = +3

Query: 12  YVIMAIYDNYKRLAFFKSGERTWTPVKDFNNVPGLIEDVIYCDDRFYAVDCNGVLFECHV 191
           +V++ IY+  ++LAF + G++ WT   D  +V   ++D+++C+  F+A+D  G ++ C +
Sbjct: 134 WVVLVIYNTDRKLAFCRRGDKQWT---DLESVASSVDDIVFCNGVFFAIDRLGEIYHCEL 190

Query: 192 SHPHPKLLRVAPSIGATLDQPWFSLIKVYLAEASGKVLQVRRQVID-----NKTNRFEVF 356
           S  +PK   +  +     D       K YLAE+    L V  + ++     +    FE++
Sbjct: 191 SANNPKATPLCSTSPFRYDS-----CKKYLAESDYDELWVVLKKLELNDDCDFETSFEIY 245

Query: 357 RLDSVGTKW 383
             +    +W
Sbjct: 246 EFNRETNEW 254