BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007173
         (1097 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20118.3| unnamed protein product [Vitis vinifera]               57   2e-13
gb|ABW74556.1| copia-like pol polyprotein [Boechera divaricarpa]       51   6e-13
emb|CAN67912.1| hypothetical protein VITISV_004101 [Vitis vinifera]    51   1e-12
ref|XP_003526342.1| PREDICTED: uncharacterized protein LOC100798...    73   1e-10
dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Gl...    42   2e-10

>emb|CBI20118.3| unnamed protein product [Vitis vinifera]
          Length = 1354

 Score = 56.6 bits (135), Expect(2) = 2e-13
 Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
 Frame = +2

Query: 689 GKPLHFLCF*SNLTKAPSNTRWTDSGANNNVSNTMQRFLTT-EPQVQMTFLFLG 847
           G  L F+C+ SNL + PSNT W DSGA  +V+N MQ FLTT +P+    FL++G
Sbjct: 643 GINLSFVCYESNLAEVPSNTWWIDSGATTHVTNLMQGFLTTRKPKESEKFLYMG 696



 Score = 45.8 bits (107), Expect(2) = 2e-13
 Identities = 23/58 (39%), Positives = 37/58 (63%)
 Frame = +1

Query: 844  RVKAPVEAI*TFRLLLDSNCHLDLVQTVYVSSVSCNLTSMSRLENDSFTNRAGNGYFS 1017
            R+K  V A+ T+RLLL++   +DL+ T YV S+S NL S+S+L+   ++    +G  S
Sbjct: 698  RLKVEVVAVGTYRLLLETGHRMDLLNTFYVPSISRNLVSLSKLDATGYSVLFSSGQLS 755


>gb|ABW74556.1| copia-like pol polyprotein [Boechera divaricarpa]
          Length = 931

 Score = 51.2 bits (121), Expect(2) = 6e-13
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
 Frame = +2

Query: 593 PKKERKKRQQVPFL*KKTTYFHLDCA---SIV*NEGKPLHFLCF*SNLTKAPSNTRWTDS 763
           P+++ KK  +  F  KKT +F  DC    +    +GK   F+C   NL + P+NT W DS
Sbjct: 88  PERQIKKEIKC-FFCKKTGHFKKDCLKRKAWFEKKGKHYSFVCSELNLIEVPNNTWWLDS 146

Query: 764 GANNNVSNTMQRFLTTEP-QVQMTFLFLG 847
           GA  +VSN  Q F + +P +    +LF+G
Sbjct: 147 GATTHVSNIKQGFSSIQPIRGAEQYLFMG 175



 Score = 49.7 bits (117), Expect(2) = 6e-13
 Identities = 23/45 (51%), Positives = 32/45 (71%)
 Frame = +1

Query: 844 RVKAPVEAI*TFRLLLDSNCHLDLVQTVYVSSVSCNLTSMSRLEN 978
           R+KA +E I T+RL+LD+ CH+DL   +YV   + NL S+SRL N
Sbjct: 177 RMKALIEGIGTYRLILDTGCHVDLESCLYVPECARNLVSISRLHN 221


>emb|CAN67912.1| hypothetical protein VITISV_004101 [Vitis vinifera]
          Length = 1012

 Score = 50.8 bits (120), Expect(3) = 1e-12
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
 Frame = +3

Query: 270 GVQKV*SPTLNLQMSMTIYDDN-----------FLIQFVLNSLPA*YRPFHNHNNTIKNK 416
           G  K    TL ++M    YD +           FL+ F++ SLP+ + PF  + NT K+K
Sbjct: 106 GTSKSLESTLMIKMITMKYDGHSSVREHIMKMSFLVHFIMTSLPSQFGPFKINYNTQKDK 165

Query: 417 RNQNELAKVLVQKKARLK*QNSLVAHFMVQGWGQKNSESMLKKPLSVNHLSRMKLIKLYQ 596
              +EL  + VQ++ RLK +   +AH  +    +   +   KK    N +S       + 
Sbjct: 166 WKMSELIVMCVQEEERLKVEKPDMAHLTMGPNKKSFKKGKGKKKKQGNDVS-------HN 218

Query: 597 RKKERKDNKYHFCKKRLH 650
            +KE    + HFC K+ H
Sbjct: 219 GQKEENKIQCHFCHKKGH 236



 Score = 38.5 bits (88), Expect(3) = 1e-12
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = +1

Query: 847  VKAPVEAI*TFRLLLDSNCHLDLVQTVYVSSVSCNLTSMSRLENDSFTNRAGNGYFSFTA 1026
            ++  +EAI +  L+LD    +DLV T+YV   + NL S+ RL++  +  + GN   S   
Sbjct: 295  IEVEIEAIGSLHLILDIGFIMDLVDTIYVPVFTRNLISVPRLDSYGYELKFGNNGVS--- 351

Query: 1027 PYLFQCKCI 1053
              LF   C+
Sbjct: 352  --LFYNSCL 358



 Score = 30.0 bits (66), Expect(3) = 1e-12
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +2

Query: 737 PSNTRWTDSGANNNVSNTMQRFLTTE 814
           P N+ W D+GA+ +++N++Q +LT++
Sbjct: 255 PPNSWWIDTGASIHITNSLQGYLTSK 280


>ref|XP_003526342.1| PREDICTED: uncharacterized protein LOC100798367 [Glycine max]
          Length = 674

 Score = 72.8 bits (177), Expect = 1e-10
 Identities = 39/72 (54%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
 Frame = +1

Query: 811  RTTSPNDVFVF---RVKAPVEAI*TFRLLLDSNCHLDLVQTVYVSSVSCNLTSMSRLEND 981
            +T SPN  FVF   RVKAPVEA+ T+RL LD+  HLDL++T+YV S+S NL S+S+L+  
Sbjct: 40   QTISPNKKFVFMGNRVKAPVEAVGTYRLKLDTGHHLDLLETLYVPSLSRNLVSLSKLDIT 99

Query: 982  SFTNRAGNGYFS 1017
             ++   GNG FS
Sbjct: 100  GYSFNFGNGCFS 111


>dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Glycine max]
          Length = 1321

 Score = 42.4 bits (98), Expect(3) = 2e-10
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = +3

Query: 330 DNFLIQFVLNSLPA*YRPFHNHNNTIKNKRNQNELAKVLVQKKARL 467
           ++FL+ F+LN+LP  Y PF    NT K+K + NEL  + VQ++ RL
Sbjct: 119 ESFLVHFILNTLPHEYGPFKISYNTHKDKWSINELMTMCVQEEERL 164



 Score = 38.1 bits (87), Expect(3) = 2e-10
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +2

Query: 542 KAIKRESSKQNETYQAVPKKERKKRQQVPFL*KKTTYFHLDCASI---V*NEGKPLHFLC 712
           KAIK ++ ++      +P +   K+    F  KK  +   +C      +  +GK +  +C
Sbjct: 182 KAIKSQAYQKGNG--KIPPQADIKKVAKCFFCKKKGHMKKNCPGFQKWLEKKGKSISLVC 239

Query: 713 F*SNLTKAPSNTRWTDSGANNNVSNTMQ 796
           + SN+     NT W DSG+  +++N++Q
Sbjct: 240 YESNMVSVNINTWWIDSGSTIHIANSLQ 267



 Score = 31.6 bits (70), Expect(3) = 2e-10
 Identities = 21/38 (55%), Positives = 23/38 (60%)
 Frame = +1

Query: 859 VEAI*TFRLLLDSNCHLDLVQTVYVSSVSCNLTSMSRL 972
           VEAI T  L L S   L L +T YV S S NL S+SRL
Sbjct: 292 VEAIGTCILTLSSGFILKLERTFYVPSFSRNLISISRL 329