BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007108
         (931 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    83   8e-14
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    79   1e-12
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    76   1e-11
gb|AFW65836.1| hypothetical protein ZEAMMB73_825751 [Zea mays]         74   5e-11
gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze...    67   8e-09

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 83.2 bits (204), Expect = 8e-14
 Identities = 74/276 (26%), Positives = 116/276 (42%), Gaps = 6/276 (2%)
 Frame = -2

Query: 930 CCVCKAS*ESQLHILFHCTVARRAWRFTTHLFEMQHLPQEINDILQNSKHFSSLILDMWK 751
           CC C+   E+  HI   C V  + W +     + QHL  + + IL    + S ++  +  
Sbjct: 114 CCFCRKQAETSSHIFLQCPVTLQLWDWLLKATD-QHL--DFSSIL----NISRMVQHVMN 166

Query: 750 AAIITCLVSLWKNRNKVLYDEKGPDLKGICYQIRSAAVRAHGKS---KGYMNNTLQDLNT 580
           +AI+  + S+W   N   +D     +  +   I +  +R        KG   +++QD   
Sbjct: 167 SAIVHIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGA--SSMQDFKL 224

Query: 579 LHSLILAHKLRRAPQILECFLLLPPVGILKVNTDGCFLGNPGRSGWGNIHKNSDGEVVXX 400
                +  K  R     E   + P  G +K+N DG  +G+P     G I + S       
Sbjct: 225 ARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGA 284

Query: 399 XXXGMGITTNFMAESRAVVEGIKKGIALGWTSIWVETDSSSVALAFQ-SDRVHWKLKAAW 223
               +G  T   AE  A +  I+K   L  T+IW+ETDS +V  AF  +  V WK+   W
Sbjct: 285 FAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRW 344

Query: 222 DD--LKKRAVWINITSTWREVNFGTDCLSKFEANLA 121
            +  L  R++    T   RE N   D L+K    LA
Sbjct: 345 HNCLLFCRSIRSLCTHVNREGNLVADALAKNGQGLA 380


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 79.3 bits (194), Expect = 1e-12
 Identities = 71/295 (24%), Positives = 123/295 (41%), Gaps = 8/295 (2%)
 Frame = -2

Query: 930 CCVCKAS*ESQLHILFHCTVARRAWRF----TTHLFEMQHLPQEINDILQNSKHFSSLIL 763
           CC C  S ES  HI F C V  R W +    T  L +     Q +   ++N    S L+ 
Sbjct: 78  CCFCMKSAESSQHIFFECHVTSRLWDWLGKGTDKLLDCSSCLQLL---IRNWGSGSKLVN 134

Query: 762 DMWKAAIITCLVSLWKNRNKVLYDEKGPDLKGICYQIRSAAVRAHGKSKGYMNNTLQDLN 583
           ++  +AII  + S+W  RN+  +  K   +  +   I +    +        N+ +QD  
Sbjct: 135 NILNSAIIHTIWSIWIERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIKGNSAMQDYK 194

Query: 582 TLHSLILAHKLRRAPQILECFLLLPPVG-ILKVNTDGCFLGNPGRSGWGNIHKNSDGEVV 406
                 +  K++R    L+  +  PP+G I+K+N DG  +G       G + ++S+   +
Sbjct: 195 VAKLFNIPFKVKRVTPHLD-IIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFL 253

Query: 405 XXXXXGMGITTNFMAESRAVVEGIKKGIALGWTSIWVETDSSSVALAFQSD-RVHWKLKA 229
                 +G  T   AE  A +  ++K   +    + +ETDS  V  AF     V W+++A
Sbjct: 254 GAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRA 313

Query: 228 AWDDLKK--RAVWINITSTWREVNFGTDCLSKFEANLAKNTETWWNEKPDLLHRI 70
            W +      ++  +     RE N   D L+K    L+      W   P  ++ +
Sbjct: 314 RWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSLYYTQLWTSPPPFIYHL 368


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
 Frame = -2

Query: 501 GILKVNTDGCFLGNPGRSGWGNIHKNSDGEVVXXXXXGMGITTNFMAESRAVVEGIKKGI 322
           G +K+N DG   G P     G + +N     +      +G  T F AE  A +  I+K I
Sbjct: 9   GRVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSI 68

Query: 321 ALGWTSIWVETDSSSVALAF-QSDRVHWKLKAAWDDLKKRAVWINITST--WREVNFGTD 151
                 IW+ETDS  V  AF  S+ V W+L+  W++    A  I    T   RE N G D
Sbjct: 69  EYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGAD 128

Query: 150 CLSKFEANLAKNTETWWNEKP 88
            L+K   +LA  T  WW+  P
Sbjct: 129 SLAKNGKSLALLTSQWWSSSP 149


>gb|AFW65836.1| hypothetical protein ZEAMMB73_825751 [Zea mays]
          Length = 279

 Score = 73.9 bits (180), Expect = 5e-11
 Identities = 67/289 (23%), Positives = 112/289 (38%), Gaps = 14/289 (4%)
 Frame = -2

Query: 894 HILFHCTVARRAWRFTTHLFEMQHLPQEINDILQNSKHFSSLILDM-------WKAAIIT 736
           H+ F C   ++ WR          L  E   IL  SK  +  +++         K  ++ 
Sbjct: 11  HLFFKCKKVKQVWRC---------LCLEDTRILLASKASALEVIESILTLREETKIKVVL 61

Query: 735 CLVSLWKNRNKVLYDEKGPDLKGICYQIRSAAVRAHGKSKGYMNNTLQDLNTLHSLILAH 556
            L   W  RNK +  E+    + +C                  N     L  +  L +  
Sbjct: 62  LLWCWWSARNKAIQGERCGSTEEVC------------------NTVAYHLMNMEKLQIGK 103

Query: 555 KLRRAPQILECFLLLPPVGILKVNTDGCFLGNPGRSGWGNIHKNSDGEVVXXXXXGM-GI 379
             R  P  L+     PP G  K+N DG +L   G  GWG I +  DG  +      + GI
Sbjct: 104 SARAPPMNLKW--QPPPAGFYKINCDGSYLAKSGLGGWGCIIRGHDGSFLAAGAGTLTGI 161

Query: 378 TTNFMAESRAVVEGIKKGIALGWTSIWVETDSSSVALAFQSDRVHWK-LKAAWDDLKKRA 202
           ++   AES A ++G++  + LG  ++ +ETD++ +  A  S       L   + +++ R 
Sbjct: 162 SSTLHAESVACMKGLELAVFLGMQNVMIETDAAILKTALTSQEYDLSALGVVFKEIRSRM 221

Query: 201 ----VWINITSTWREVNFGTDCLSKFEANLAK-NTETWWNEKPDLLHRI 70
                   ++   R  N   DCL+   AN    ++  W +  PD +  I
Sbjct: 222 FSEFACCIVSKCQRTCNLVADCLTAHGANSGDVDSSLWLDHAPDFICNI 270


>gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays]
          Length = 472

 Score = 66.6 bits (161), Expect = 8e-09
 Identities = 64/291 (21%), Positives = 112/291 (38%), Gaps = 7/291 (2%)
 Frame = -2

Query: 930 CCVCKAS*ESQLHILFHCTVARRAWRFTTHLFEMQHLPQEINDILQNSKHFSSLILDMWK 751
           C +C    E   H+   C   ++ WR    L + + L       L+  +   +L  +  K
Sbjct: 192 CPMCFRLDEDGGHLFLKCKKVKQVWRCLC-LEDTRTLLASKASALEVIESILTL-REETK 249

Query: 750 AAIITCLVSLWKNRNKVLYDEKGPDLKGICYQIRSAAVRAHGKSKGYMNNTLQDLNTLHS 571
             ++  L   W  RNK +  E+    + +C                  N     L  +  
Sbjct: 250 IKVVLLLWCWWSARNKTIQGERCGSTEEVC------------------NTVAYHLMNMEK 291

Query: 570 LILAHKLRRAPQILECFLLLPPVGILKVNTDGCFLGNPGRSGWGNIHKNSDGEVVXXXXX 391
           L +    R  P  L+     PP G  K+N DG +    G   WG I +  DG  +     
Sbjct: 292 LQIGKSARAPPMNLKW--QPPPAGFYKINCDGSYRAKSGLGSWGCIIRGHDGGFLAAGAG 349

Query: 390 GM-GITTNFMAESRAVVEGIKKGIALGWTSIWVETDSSSVALAFQSDRVHWK-LKAAWDD 217
            + GI++   AES A ++G++  + LG  ++ +ETD++ +  A  S       L   + +
Sbjct: 350 ALTGISSALHAESVACMKGLELAVFLGMQNVMIETDAAILKTALTSQEYDLSALGVVFKE 409

Query: 216 LKKRA----VWINITSTWREVNFGTDCLSKFEANLAK-NTETWWNEKPDLL 79
           ++ R         ++   R  N   DCL+   AN    ++  W +  PD +
Sbjct: 410 IRSRMFSEFACCIVSKCQRTCNLVADCLAAHGANSGDVDSSLWLDHAPDFI 460