BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007080
         (946 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containi...   386   e-105
ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containi...   334   2e-89
ref|XP_003602124.1| Pentatricopeptide repeat-containing protein ...   330   4e-88
emb|CBI19956.3| unnamed protein product [Vitis vinifera]              326   6e-87
ref|XP_002302197.1| predicted protein [Populus trichocarpa] gi|2...   306   4e-81

>ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  386 bits (991), Expect = e-105
 Identities = 194/289 (67%), Positives = 227/289 (78%)
 Frame = -3

Query: 872 NLIKQYLSQRCFKEAFNIYTQTRRKGNTLHAVIPILLKACASLSLLNTGKSLHAELTKCG 693
           +LI+ YLSQ   +EA  +YT  RRKG  L  V P++LKACASLS++  GK+LHAE  K G
Sbjct: 65  HLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLVLKACASLSIVKHGKALHAESIKNG 124

Query: 692 VVSNVMIGTSLVSFYSKCGVIFDSRKLFDEMPETNVVTWNAMIGGYLKNGDMGTAWVLFG 513
           V  +VMIGTSLV  Y+KCG + DSRK+FD MPE N VTWNAMI GYL NGD  +A +LF 
Sbjct: 125 VDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFE 184

Query: 512 KMKMRSSATWSEMIDGFARSGDIVAARRLFDQVPSETKNVVVWTVMVDGYVSNGMMEEAR 333
           KM +R++ TW EMIDGFARSGD   ARR FD VPSE +NVV WTVMVDGY  N  ME AR
Sbjct: 185 KMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAR 244

Query: 332 EVFEVMPVRNFFVWSSMIAGYCKKGDVKEARVIFDRINKRNLVNWNALIAGYAQNGFCKE 153
           EVFE MP RNFF WSSMI+GYCKKG+VKEAR IFDRI  RNLVNWN+LI+GYAQNGF +E
Sbjct: 245 EVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEE 304

Query: 152 ALEAFGRMQADGFEPDGVTIASMLSACAQLGSLDDGREVHDLIRRKRIK 6
           ALEAFG+MQA+GFEPD VTIAS+LSAC+QLG LD G+++H ++  K IK
Sbjct: 305 ALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIK 353



 Score = 83.6 bits (205), Expect = 6e-14
 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 8/212 (3%)
 Frame = -3

Query: 875 SNLIKQYLSQRCFKEAFNIYTQTRRKGNTLHAV-IPILLKACASLSLLNTGKSLHAELTK 699
           ++LI  Y      +EA   + + + +G     V I  +L AC+ L LL+ GK +H  +  
Sbjct: 290 NSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNH 349

Query: 698 CGVVSNVMIGTSLVSFYSKCGVIFDSRKLFDEMPETNVVTWNAMIGGYLKNGDMGTAWVL 519
            G+  N  +   LV  Y+KCG + ++R +F+ M   N   WN+MI G+  +G    A   
Sbjct: 350 KGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEF 409

Query: 518 FGKMKMR----SSATWSEMIDGFARSGDIVAARRLFDQVPSE--TKNVVVWTVMVDGYVS 357
           FG+M+         T+  ++   A  G + A   +F ++     T  +  +  ++D    
Sbjct: 410 FGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGR 469

Query: 356 NGMMEEAREVFEVMPVR-NFFVWSSMIAGYCK 264
            G ++EA ++ + MPV+ N  VW +++ G C+
Sbjct: 470 AGRIKEAYDLIKRMPVKPNDVVWGALL-GACR 500


>ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score =  334 bits (857), Expect = 2e-89
 Identities = 168/286 (58%), Positives = 210/286 (73%)
 Frame = -3

Query: 866 IKQYLSQRCFKEAFNIYTQTRRKGNTLHAVIPILLKACASLSLLNTGKSLHAELTKCGVV 687
           I+ ++ Q   + A   Y QTR +G    +V P+L KACASL  L+  K+LHAE  K G  
Sbjct: 19  IRNHIQQGSLRCALLAYKQTRHEGVYDSSVAPLLFKACASLPFLHYVKALHAESIKAGSE 78

Query: 686 SNVMIGTSLVSFYSKCGVIFDSRKLFDEMPETNVVTWNAMIGGYLKNGDMGTAWVLFGKM 507
           S+V+IGT+L++ YSKCGV+ D+R LFD MPE NVVTWNAMI GYL+NGD  +A+++F KM
Sbjct: 79  SDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKM 138

Query: 506 KMRSSATWSEMIDGFARSGDIVAARRLFDQVPSETKNVVVWTVMVDGYVSNGMMEEAREV 327
           + ++  TWS+MI GFAR+GDI  ARRLFD+VP E KNVV WTVMVDGY   G ME AREV
Sbjct: 139 QGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAAREV 198

Query: 326 FEVMPVRNFFVWSSMIAGYCKKGDVKEARVIFDRINKRNLVNWNALIAGYAQNGFCKEAL 147
           FE+MP RN FVWSSMI GY KKG+V EA  +FD +  RNL  WN++IAGY QNGF ++AL
Sbjct: 199 FEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKAL 258

Query: 146 EAFGRMQADGFEPDGVTIASMLSACAQLGSLDDGREVHDLIRRKRI 9
            AF  M A+GFEPD  T+ S+LSACAQLG LD G+++H +I  K I
Sbjct: 259 LAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGI 304



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 10/227 (4%)
 Frame = -3

Query: 767 LLKACASLSLLNTGKSLHAELTKCGVVSNVMIGTSLVSFYSKCGVIFDSRKLFDEMPETN 588
           +L ACA L  L+ GK +H  +   G+V N  + + LV  Y+KCG + ++R +F+   E N
Sbjct: 279 VLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKN 338

Query: 587 VVTWNAMIGGYLKNGDMGTAWVLFGKMKMRS----SATWSEMIDGFARSGDIVAARRLFD 420
           +  WNAMI G+  NG        FG+M+  +      T+  ++   A  G +  A  +  
Sbjct: 339 IFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVIS 398

Query: 419 QVPSETKNVVV--WTVMVDGYVSNGMMEEAREVFEVMPVR-NFFVWSSMIAGYCKKGDVK 249
           ++      + +  +  MVD     G +++A ++   MP++ N  V  +M+       D+ 
Sbjct: 399 KMEGYRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMKPNDTVLGAMLGACRIHSDMN 458

Query: 248 EARVIFDRINKRNLV---NWNALIAGYAQNGFCKEALEAFGRMQADG 117
            A  +   I +  +    + N L++         E  E   R+  DG
Sbjct: 459 MAEQVMKLICEEPVTGASSHNVLLSNIYAASEKWEKAERMKRITVDG 505


>ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491172|gb|AES72375.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  330 bits (845), Expect = 4e-88
 Identities = 165/281 (58%), Positives = 203/281 (72%)
 Frame = -3

Query: 851 SQRCFKEAFNIYTQTRRKGNTLHAVIPILLKACASLSLLNTGKSLHAELTKCGVVSNVMI 672
           +Q   K A  +Y QTR        VIP LLKAC S   L   KSLHAE  K G   +V I
Sbjct: 29  NQASLKRALVLYKQTRHDTTHDPTVIPQLLKACDSHPFLPYVKSLHAESIKAGSDVDVFI 88

Query: 671 GTSLVSFYSKCGVIFDSRKLFDEMPETNVVTWNAMIGGYLKNGDMGTAWVLFGKMKMRSS 492
           GT++V+ Y+KCGV+ D+RK+FD MPE NVVTWNAMIGGYL+NGD  +A + F +M  ++ 
Sbjct: 89  GTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTR 148

Query: 491 ATWSEMIDGFARSGDIVAARRLFDQVPSETKNVVVWTVMVDGYVSNGMMEEAREVFEVMP 312
            +WS+MI GFAR+GD + AR+ FD+VP E K+VV+WTVMVDGY   G ME+AREVFE+MP
Sbjct: 149 VSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELMP 208

Query: 311 VRNFFVWSSMIAGYCKKGDVKEARVIFDRINKRNLVNWNALIAGYAQNGFCKEALEAFGR 132
            RN+FVWSSM+ GYCKKGDV EA  IF RI  RNL  WN++IAGY QNG  ++ALEAFG 
Sbjct: 209 ERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGE 268

Query: 131 MQADGFEPDGVTIASMLSACAQLGSLDDGREVHDLIRRKRI 9
           M  DGFEPD  T+ S+LSACAQLG LD G+++H +I  K I
Sbjct: 269 MGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGI 309



 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 8/230 (3%)
 Frame = -3

Query: 887 MESPSNLIKQYLSQRCFKEAFNIYTQTRRKG-NTLHAVIPILLKACASLSLLNTGKSLHA 711
           +E  +++I  Y+   C ++A   + +    G       +  +L ACA L  L+ GK +H 
Sbjct: 243 LEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHH 302

Query: 710 ELTKCGVVSNVMIGTSLVSFYSKCGVIFDSRKLFDEMPETNVVTWNAMIGGYLKNGDMGT 531
            +   G+  N  + + L+  Y+KCG + ++R +F+   E NV  WNAMI G+  NG    
Sbjct: 303 MIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNE 362

Query: 530 AWVLFGKMKMRS----SATWSEMIDGFARSGDIVAARRLFDQVPSETKNVVV--WTVMVD 369
                 +M+  +    + T+  ++   A  G +  A  +  ++      + +  +  MVD
Sbjct: 363 VLEYLDRMQESNIRLDAVTFITVLSACAHGGLMSEALEVISKMEEYGIEMGIRHYGCMVD 422

Query: 368 GYVSNGMMEEAREVFEVMPVR-NFFVWSSMIAGYCKKGDVKEARVIFDRI 222
                G ++EA E+ + MP++ N  V  +MI       D+K A  +   I
Sbjct: 423 LLGRAGKLKEAYELIKRMPMKPNETVLGAMIGACWIHSDMKMAEQVMKMI 472


>emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  326 bits (835), Expect = 6e-87
 Identities = 159/224 (70%), Positives = 182/224 (81%)
 Frame = -3

Query: 677 MIGTSLVSFYSKCGVIFDSRKLFDEMPETNVVTWNAMIGGYLKNGDMGTAWVLFGKMKMR 498
           MIGTSLV  Y+KCG + DSRK+FD MPE N VTWNAMI GYL NGD  +A +LF KM +R
Sbjct: 1   MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60

Query: 497 SSATWSEMIDGFARSGDIVAARRLFDQVPSETKNVVVWTVMVDGYVSNGMMEEAREVFEV 318
           ++ TW EMIDGFARSGD   ARR FD VPSE +NVV WTVMVDGY  N  ME AREVFE 
Sbjct: 61  TAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEG 120

Query: 317 MPVRNFFVWSSMIAGYCKKGDVKEARVIFDRINKRNLVNWNALIAGYAQNGFCKEALEAF 138
           MP RNFF WSSMI+GYCKKG+VKEAR IFDRI  RNLVNWN+LI+GYAQNGF +EALEAF
Sbjct: 121 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 180

Query: 137 GRMQADGFEPDGVTIASMLSACAQLGSLDDGREVHDLIRRKRIK 6
           G+MQA+GFEPD VTIAS+LSAC+QLG LD G+++H ++  K IK
Sbjct: 181 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIK 224



 Score = 83.6 bits (205), Expect = 6e-14
 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 8/212 (3%)
 Frame = -3

Query: 875 SNLIKQYLSQRCFKEAFNIYTQTRRKGNTLHAV-IPILLKACASLSLLNTGKSLHAELTK 699
           ++LI  Y      +EA   + + + +G     V I  +L AC+ L LL+ GK +H  +  
Sbjct: 161 NSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNH 220

Query: 698 CGVVSNVMIGTSLVSFYSKCGVIFDSRKLFDEMPETNVVTWNAMIGGYLKNGDMGTAWVL 519
            G+  N  +   LV  Y+KCG + ++R +F+ M   N   WN+MI G+  +G    A   
Sbjct: 221 KGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEF 280

Query: 518 FGKMKMR----SSATWSEMIDGFARSGDIVAARRLFDQVPSE--TKNVVVWTVMVDGYVS 357
           FG+M+         T+  ++   A  G + A   +F ++     T  +  +  ++D    
Sbjct: 281 FGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGR 340

Query: 356 NGMMEEAREVFEVMPVR-NFFVWSSMIAGYCK 264
            G ++EA ++ + MPV+ N  VW +++ G C+
Sbjct: 341 AGRIKEAYDLIKRMPVKPNDVVWGALL-GACR 371


>ref|XP_002302197.1| predicted protein [Populus trichocarpa] gi|222843923|gb|EEE81470.1|
           predicted protein [Populus trichocarpa]
          Length = 440

 Score =  306 bits (785), Expect = 4e-81
 Identities = 148/215 (68%), Positives = 175/215 (81%)
 Frame = -3

Query: 650 YSKCGVIFDSRKLFDEMPETNVVTWNAMIGGYLKNGDMGTAWVLFGKMKMRSSATWSEMI 471
           Y+KCG I DSRKLF+ MPE NVVTWNAMI GY KNGDM +A VLF KM  R++ +W EMI
Sbjct: 2   YAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMI 61

Query: 470 DGFARSGDIVAARRLFDQVPSETKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNFFVW 291
           DGFARSGD+VAARR F++VP E KNVV WTVM+DGY S G ME AR +FE MP RNFFVW
Sbjct: 62  DGFARSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVW 121

Query: 290 SSMIAGYCKKGDVKEARVIFDRINKRNLVNWNALIAGYAQNGFCKEALEAFGRMQADGFE 111
           SSMI+GYCK G+VKEAR IFDR+  RNLVNWN+LI GY+QNGFC+EAL+AFG+MQ +G+E
Sbjct: 122 SSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYE 181

Query: 110 PDGVTIASMLSACAQLGSLDDGREVHDLIRRKRIK 6
           PD VT+  +LSACAQL  LD G++VH +I  K +K
Sbjct: 182 PDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMK 216



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 8/212 (3%)
 Frame = -3

Query: 875 SNLIKQYLSQRCFKEAFNIYTQTRRKGNTLHAVIPI-LLKACASLSLLNTGKSLHAELTK 699
           ++LI  Y      +EA + + + + +G     V  + +L ACA LSLL+ GK +H  +  
Sbjct: 153 NSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICA 212

Query: 698 CGVVSNVMIGTSLVSFYSKCGVIFDSRKLFDEMPETNVVTWNAMIGGYLKNGDMGTAWVL 519
            G+  N  +  +LV  Y+KCG +  +R +F+ M   N   WN+MI G+  +G    A   
Sbjct: 213 KGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEF 272

Query: 518 FGKMKMRS----SATWSEMIDGFARSGDIVAARRLFDQVP--SETKNVVVWTVMVDGYVS 357
           FG+M+  +      T+  ++      G +     +F ++     + ++  +  +VD    
Sbjct: 273 FGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGR 332

Query: 356 NGMMEEAREVFEVMPVR-NFFVWSSMIAGYCK 264
            G +++A  + + MP++ N  VW + + G C+
Sbjct: 333 AGRIQDAYHLIKSMPMKPNDTVWGAFL-GACR 363