BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007072
         (1121 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149836.1| PREDICTED: shikimate kinase, chloroplastic-l...   293   5e-77
ref|XP_002273840.1| PREDICTED: shikimate kinase, chloroplastic [...   290   3e-76
ref|XP_003518273.1| PREDICTED: shikimate kinase, chloroplastic [...   283   4e-74
ref|XP_002512880.1| protein with unknown function [Ricinus commu...   279   8e-73
ref|XP_002328924.1| shikimate kinase [Populus trichocarpa] gi|22...   277   3e-72

>ref|XP_004149836.1| PREDICTED: shikimate kinase, chloroplastic-like [Cucumis sativus]
            gi|449522321|ref|XP_004168175.1| PREDICTED: shikimate
            kinase, chloroplastic-like [Cucumis sativus]
          Length = 307

 Score =  293 bits (750), Expect = 5e-77
 Identities = 155/304 (50%), Positives = 209/304 (68%)
 Frame = -2

Query: 1102 LTQKNMETRTLLQSSITTSLNFYTHQLSSLSLINAKPFHFQRSHTTSLPPAKVTKPITPT 923
            LT     T      ++  + +F     SSL   N+ P H        + P  +       
Sbjct: 12   LTDLQFNTHLPKSEALALNSSFSLSLPSSLRRNNSLPLH--------ICPPFIQSSAIRR 63

Query: 922  LRISPSRCSLQDEQLPGVDKNVVGQDHSVALKNKAAEISSQLKGTSIFLVGINNNIKAKL 743
             R  PS C   D     V+  V   D S+ +K KA +++ +LKGTSIFLVGIN++IK KL
Sbjct: 64   RRSLPSSCLASDGTALNVEAKVTVDDLSLEVKKKAMDVAPELKGTSIFLVGINSSIKTKL 123

Query: 742  GNVLADMLRYYYFDSDSLVEQAAGGEAAAKSFREKDDKGFLESETEVLRQLSSMGRLVIC 563
            G +LAD+LRYYYFDSDSLV + +GGEAAAK +++ D+KGF   ETEVL+QLSSMGRLV+C
Sbjct: 124  GKLLADVLRYYYFDSDSLVVEVSGGEAAAKLYKQSDEKGFQAFETEVLKQLSSMGRLVVC 183

Query: 562  AGDGAVKSSTNLSFMRHGISIWIDVPIVVLAKEVKESGNQPPPDDVILNSDPSKAVAKLT 383
            AG+GAV+SSTNL+ +RHGI++WID+P+ ++A+E  E  +Q P  D+  +   S+ + ++T
Sbjct: 184  AGNGAVQSSTNLALLRHGITLWIDLPLQMIAEEFAEDRSQHPVFDISTSGSYSEVLGQIT 243

Query: 382  ELYERMRGGYATADATISLQKVASQLGYDDTDAVTIEDMAMEAFREIEKLTRVKKMMEAA 203
             LY++++ GYATADA ISLQK+AS+LGYDD +AVT EDMAMEA +EIEKLTRVKKM+EAA
Sbjct: 244  SLYQKVKDGYATADALISLQKLASKLGYDDFNAVTTEDMAMEALKEIEKLTRVKKMIEAA 303

Query: 202  ARPF 191
            A+PF
Sbjct: 304  AKPF 307


>ref|XP_002273840.1| PREDICTED: shikimate kinase, chloroplastic [Vitis vinifera]
           gi|296082301|emb|CBI21306.3| unnamed protein product
           [Vitis vinifera]
          Length = 305

 Score =  290 bits (743), Expect = 3e-76
 Identities = 155/258 (60%), Positives = 191/258 (74%), Gaps = 9/258 (3%)
 Frame = -2

Query: 937 PITPTLRISPSRCSLQDEQLPGVDK----NVVGQDHSVALKNKAAEISSQLKGTSIFLVG 770
           P  P L  SP   S+      G        VV  D S+A+K KA EIS  LKGTSIFLVG
Sbjct: 48  PCVPPLTSSPKSLSITFSLPDGASSISATKVVDVDLSLAVKKKAMEISPVLKGTSIFLVG 107

Query: 769 INNNIKAKLGNVLADMLRYYYFDSDSLVEQAAGGEAAAKSFREKDDKGFLESETEVLRQL 590
           +N+ IK  +G +LAD LRYY+FDSDSLVE+A GGE+AAKS +E+D+KGF +SETEVL+QL
Sbjct: 108 MNSTIKTNVGKLLADALRYYHFDSDSLVEEACGGESAAKSLKEQDEKGFHDSETEVLKQL 167

Query: 589 SSMGRLVICAGDGAVKSSTNLSFMRHGISIWIDVPIVVLAKEVKESGNQPPPDDV----- 425
           SSMGRLV+CAGDG V+SSTNL+ +RHGISIWIDVPI ++AK + E G Q P  ++     
Sbjct: 168 SSMGRLVVCAGDGLVQSSTNLALLRHGISIWIDVPIEMVAKNMIEEGVQIPVTELSTAES 227

Query: 424 ILNSDPSKAVAKLTELYERMRGGYATADATISLQKVASQLGYDDTDAVTIEDMAMEAFRE 245
              +  ++  A+L  +YE M+GGYATADA++SLQKVASQLGYDD DAVT EDMAME  +E
Sbjct: 228 YSETGDNQVFAQLAVVYEEMKGGYATADASVSLQKVASQLGYDDLDAVTTEDMAMEVLKE 287

Query: 244 IEKLTRVKKMMEAAARPF 191
           I++LTR+KKMME AARPF
Sbjct: 288 IQRLTRLKKMMEEAARPF 305


>ref|XP_003518273.1| PREDICTED: shikimate kinase, chloroplastic [Glycine max]
          Length = 280

 Score =  283 bits (725), Expect = 4e-74
 Identities = 155/281 (55%), Positives = 197/281 (70%), Gaps = 1/281 (0%)
 Frame = -2

Query: 1030 HQLSSLSLINAKPFHFQRSHTTSLPPAKVTKPITPTL-RISPSRCSLQDEQLPGVDKNVV 854
            H+ + L L+N      Q  H  S       K   P L R+    CS+ D     V  ++ 
Sbjct: 8    HRNTPLPLLNRPSNFLQFKHQNSF-----LKFPNPNLHRLRRLNCSVSDGT---VSSSLG 59

Query: 853  GQDHSVALKNKAAEISSQLKGTSIFLVGINNNIKAKLGNVLADMLRYYYFDSDSLVEQAA 674
              D S+A+K KAAE+SS+LKGTSIFLVG+ +++K  LG +LAD LRYYYFDSDSLVE+A 
Sbjct: 60   ATDSSLAVKKKAAEVSSELKGTSIFLVGLKSSLKTSLGKLLADALRYYYFDSDSLVEEAV 119

Query: 673  GGEAAAKSFREKDDKGFLESETEVLRQLSSMGRLVICAGDGAVKSSTNLSFMRHGISIWI 494
            GG  AAKSFRE D+KGF ESETEVL+QLSSMGRLV+CAG+G V SSTNL+ +RHGIS+WI
Sbjct: 120  GGALAAKSFRESDEKGFYESETEVLKQLSSMGRLVVCAGNGTVTSSTNLALLRHGISLWI 179

Query: 493  DVPIVVLAKEVKESGNQPPPDDVILNSDPSKAVAKLTELYERMRGGYATADATISLQKVA 314
            DVP+  +A++V E  +Q  P ++ ++    +   +L  LY++ R GYATADA IS+QKV 
Sbjct: 180  DVPLDFVARDVIEDKSQFAPSEISISGSYPEVQDELGALYDKYRVGYATADAIISVQKVV 239

Query: 313  SQLGYDDTDAVTIEDMAMEAFREIEKLTRVKKMMEAAARPF 191
            S+LG D+ D +T EDMA+EA REIEKLTRVKKM E AARPF
Sbjct: 240  SRLGCDNLDEITREDMALEALREIEKLTRVKKMQEEAARPF 280


>ref|XP_002512880.1| protein with unknown function [Ricinus communis]
           gi|223547891|gb|EEF49383.1| protein with unknown
           function [Ricinus communis]
          Length = 292

 Score =  279 bits (714), Expect = 8e-73
 Identities = 152/264 (57%), Positives = 192/264 (72%)
 Frame = -2

Query: 982 QRSHTTSLPPAKVTKPITPTLRISPSRCSLQDEQLPGVDKNVVGQDHSVALKNKAAEISS 803
           Q SH+ S      ++   P+L  +   CSL DE      +  V  D S+ALK +AA+IS 
Sbjct: 40  QSSHSFSTLIKHKSQFYRPSLSTT---CSLSDETTTSTTEVTV-LDSSLALKKRAADISP 95

Query: 802 QLKGTSIFLVGINNNIKAKLGNVLADMLRYYYFDSDSLVEQAAGGEAAAKSFREKDDKGF 623
           +LKGTSIFLVG+ +++K  LG +LAD LRYYYFDSDSLVE+ A G +AAKSF+E D+KGF
Sbjct: 96  ELKGTSIFLVGMRSSMKTSLGKLLADSLRYYYFDSDSLVEEVASGASAAKSFKETDEKGF 155

Query: 622 LESETEVLRQLSSMGRLVICAGDGAVKSSTNLSFMRHGISIWIDVPIVVLAKEVKESGNQ 443
            ESETEVL+QLSSMGRLV+CAGDGAV+S TNL+ +RHGIS+WIDVP+ ++A+ + E  +Q
Sbjct: 156 RESETEVLKQLSSMGRLVVCAGDGAVQSFTNLALLRHGISLWIDVPLDMVAQAMSEESDQ 215

Query: 442 PPPDDVILNSDPSKAVAKLTELYERMRGGYATADATISLQKVASQLGYDDTDAVTIEDMA 263
                  L+   S+ + +L   +E MRGGYATADATISLQKVA  LGYD  D+VT EDM 
Sbjct: 216 -------LSGADSEELTELIATFEAMRGGYATADATISLQKVAVNLGYDALDSVTAEDMT 268

Query: 262 MEAFREIEKLTRVKKMMEAAARPF 191
           +E  +EIEKLTRVKKM+E AARPF
Sbjct: 269 LEVLKEIEKLTRVKKMLEEAARPF 292


>ref|XP_002328924.1| shikimate kinase [Populus trichocarpa] gi|222839354|gb|EEE77691.1|
            shikimate kinase [Populus trichocarpa]
          Length = 286

 Score =  277 bits (709), Expect = 3e-72
 Identities = 152/297 (51%), Positives = 207/297 (69%), Gaps = 3/297 (1%)
 Frame = -2

Query: 1072 LLQSSITTSLNFYTHQLSSLSL---INAKPFHFQRSHTTSLPPAKVTKPITPTLRISPSR 902
            + +++ T++L    H LS  SL   I  +P  +  S  +  P   V++P + T     + 
Sbjct: 3    ITKATATSTLAAAIHNLSLSSLSSTIRPRPRPYSHSGFSKFP--LVSRPTSLT-----AT 55

Query: 901  CSLQDEQLPGVDKNVVGQDHSVALKNKAAEISSQLKGTSIFLVGINNNIKAKLGNVLADM 722
            CSL +E      K V G D S+ +K +AA++S +LKGTSIFL+G+   +K  LG +LAD 
Sbjct: 56   CSLPNETTTSTTK-VAGADTSLQVKKRAADLSPELKGTSIFLLGMRGPLKTNLGKLLADA 114

Query: 721  LRYYYFDSDSLVEQAAGGEAAAKSFREKDDKGFLESETEVLRQLSSMGRLVICAGDGAVK 542
            LRYY+F+SDSLVE+AAGGE AA+S +E+D+KGF ESETEVL+QL+SMGRLV+CAGDGAV+
Sbjct: 115  LRYYFFNSDSLVEEAAGGEFAARSLKERDEKGFRESETEVLKQLTSMGRLVVCAGDGAVQ 174

Query: 541  SSTNLSFMRHGISIWIDVPIVVLAKEVKESGNQPPPDDVILNSDPSKAVAKLTELYERMR 362
            SSTNL  +RHGIS+WIDVP+ ++A+ V E   Q     +  +   S+ + ++   YE +R
Sbjct: 175  SSTNLGLLRHGISLWIDVPLDIVARGVVEDKTQ-----LAASESHSEVLEQVVATYEELR 229

Query: 361  GGYATADATISLQKVASQLGYDDTDAVTIEDMAMEAFREIEKLTRVKKMMEAAARPF 191
             GYATADA ISLQ +A +LGYD+ D+VT ED+A+E  +EIEKLTRVKKMME AARPF
Sbjct: 230  AGYATADAKISLQNIAVKLGYDELDSVTTEDLALEVLKEIEKLTRVKKMMEEAARPF 286