BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007050
         (1852 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containi...   764   0.0  
ref|XP_002515948.1| pentatricopeptide repeat-containing protein,...   758   0.0  
ref|XP_003594555.1| Pentatricopeptide repeat-containing protein ...   737   0.0  
emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]   729   0.0  
ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containi...   726   0.0  

>ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
            [Vitis vinifera]
          Length = 990

 Score =  764 bits (1974), Expect = 0.0
 Identities = 371/456 (81%), Positives = 411/456 (90%)
 Frame = +2

Query: 2    LKFNCYTYKCVLQAYLRLNDSGKAFEVYREMRRKGYVLDIFAFNMLLDALAKDEKVEQAY 181
            L+ NCYTYKC+LQA+LR N+S KAFEVY E+RR+GY LDIFA+NMLLDALAKD KV+Q Y
Sbjct: 38   LQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVY 97

Query: 182  KVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNTMIQAL 361
             VF DMKRKHCEPDEYTYTIMIRM GK GKADE L LFQEM  KG  PN IAYNTMIQAL
Sbjct: 98   MVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQAL 157

Query: 362  AKNRMVDKVIFLFSKMIENGCQPNEFTYSVILNVLVVEGQLGKLDEVIDVSKKYINKSIY 541
            A NRMVDK IFLFSKM+EN C+PN FT+SVILNVLV EGQLG+LDEV++VS K++NKSIY
Sbjct: 158  ANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIY 217

Query: 542  AYLVKTLSKLGHANEAHRLFCNMWSFHDKGDRDAYMSMLESLCDAGRTAEALDLLSKIHE 721
            AYLV+TLSKLGHA+EAHRLFCNMWSFHD+GDRDAYMSMLESLCDAG+T EALDLLSKIHE
Sbjct: 218  AYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHE 277

Query: 722  KGISTNTVMYNMVFSALGKQKAVSHLHDLYEKMKCNGPLPDIFTYNILISSYGRAGNVVE 901
            K IST+TVMYN V SALGK K  S LHDLYEKMK +GP PDIF+YNILISS+GRAG V E
Sbjct: 278  KRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEE 337

Query: 902  AVKLFEEMENSNCKPDIISYNSLINCLGKNGDLDEAHMRFKEMQEVGLNPDVITYSTLIE 1081
            AVK+FEE+ENS+CKPDIIS+NSLINCLGKNGD+DEAHMRFKEM+E GL+PDV+TYSTLIE
Sbjct: 338  AVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIE 397

Query: 1082 CFGKTSRVEMACTLFDEMLAEGCFPNIVTYNILLDCLERCGKSTEALELYAKLKQQGLTP 1261
            CFGKT +VEMAC LFDEMLAEGC PNIVTYNILLDCLER G++ EA++LYAKLKQQGLTP
Sbjct: 398  CFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTP 457

Query: 1262 DKITYTVLERLQSGSQRKVRIRRQNPITGWVVSPLR 1369
            D ITY VLERLQSGS +KVR+RR+NPITGWVVSPLR
Sbjct: 458  DSITYAVLERLQSGSHQKVRVRRKNPITGWVVSPLR 493



 Score = 68.6 bits (166), Expect = 6e-09
 Identities = 38/148 (25%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
 Frame = +2

Query: 845  IFTYNILISSYGRAGNVVEAVKLFEEME-NSNCKPDIISYNSLINCLGKNGDLDEAHMRF 1021
            I T NILI  +G   +V     L ++ +   NC     +Y  L+    ++ + ++A   +
Sbjct: 10   ISTINILIGIFGGGADVERCFDLVKKWDLQMNC----YTYKCLLQAHLRSNNSNKAFEVY 65

Query: 1022 KEMQEVGLNPDVITYSTLIECFGKTSRVEMACTLFDEMLAEGCFPNIVTYNILLDCLERC 1201
             E++  G   D+  Y+ L++   K ++V+    +F +M  + C P+  TY I++    + 
Sbjct: 66   VELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKI 125

Query: 1202 GKSTEALELYAKLKQQGLTPDKITYTVL 1285
            GK+ E+L L+ ++ ++G TP+ I Y  +
Sbjct: 126  GKADESLTLFQEMTEKGYTPNLIAYNTM 153


>ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544853|gb|EEF46368.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 706

 Score =  758 bits (1956), Expect = 0.0
 Identities = 359/456 (78%), Positives = 414/456 (90%)
 Frame = +2

Query: 2    LKFNCYTYKCVLQAYLRLNDSGKAFEVYREMRRKGYVLDIFAFNMLLDALAKDEKVEQAY 181
            LK N YTYKC++QAYLR  DS   F VY EM+RKGY LDIFAFNMLLDALAKD+KV+QA+
Sbjct: 38   LKMNGYTYKCLVQAYLRSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAF 97

Query: 182  KVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNTMIQAL 361
            KVF DMK+KHCEPDEYTYTIMIRM G+ GK DE LALF+EML KGC+PN IAYNTMIQAL
Sbjct: 98   KVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQAL 157

Query: 362  AKNRMVDKVIFLFSKMIENGCQPNEFTYSVILNVLVVEGQLGKLDEVIDVSKKYINKSIY 541
            A +RMVDK I LFSKM+E  C+PNEFTYSVIL +L  EGQL KLD+V+++S+KY+N+SIY
Sbjct: 158  ANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQLHKLDKVVELSRKYMNRSIY 217

Query: 542  AYLVKTLSKLGHANEAHRLFCNMWSFHDKGDRDAYMSMLESLCDAGRTAEALDLLSKIHE 721
            AYLV+TL+KLGHA+EAHRLFCNMWS+HD+GDRDA +SMLESLC+AG+T EA+DLL KIHE
Sbjct: 218  AYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHE 277

Query: 722  KGISTNTVMYNMVFSALGKQKAVSHLHDLYEKMKCNGPLPDIFTYNILISSYGRAGNVVE 901
            KGI+T+T+MYN VF+ALG+ K +SHL+DLYEKMK +GPLPDIFTYNILISS+GRAG V E
Sbjct: 278  KGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYE 337

Query: 902  AVKLFEEMENSNCKPDIISYNSLINCLGKNGDLDEAHMRFKEMQEVGLNPDVITYSTLIE 1081
            A+K+FEE+ENS+CKPDIISYNSLINCLGKNGDLDEAH+RF+EMQE GLNPDV+TYSTLIE
Sbjct: 338  AIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIE 397

Query: 1082 CFGKTSRVEMACTLFDEMLAEGCFPNIVTYNILLDCLERCGKSTEALELYAKLKQQGLTP 1261
            CFGKT +VEMAC LFDEMLAEGCFPNIVTYNILLDCLER G++ EA++LYAKLKQQGLTP
Sbjct: 398  CFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTP 457

Query: 1262 DKITYTVLERLQSGSQRKVRIRRQNPITGWVVSPLR 1369
            D ITY+VLERLQSGS RK+R+RR+NPITGWVVSPLR
Sbjct: 458  DSITYSVLERLQSGSHRKLRVRRKNPITGWVVSPLR 493



 Score = 73.6 bits (179), Expect = 2e-10
 Identities = 43/164 (26%), Positives = 81/164 (49%)
 Frame = +2

Query: 818  MKCNGPLPDIFTYNILISSYGRAGNVVEAVKLFEEMENSNCKPDIISYNSLINCLGKNGD 997
            M  NG    I T NILI  +G   ++   + L E+ +    K +  +Y  L+    ++ D
Sbjct: 1    MDKNGVRGTISTVNILIGFFGDGEDLERCIGLIEKWD---LKMNGYTYKCLVQAYLRSCD 57

Query: 998  LDEAHMRFKEMQEVGLNPDVITYSTLIECFGKTSRVEMACTLFDEMLAEGCFPNIVTYNI 1177
             D     + EM+  G   D+  ++ L++   K  +V+ A  +F++M  + C P+  TY I
Sbjct: 58   SDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTI 117

Query: 1178 LLDCLERCGKSTEALELYAKLKQQGLTPDKITYTVLERLQSGSQ 1309
            ++    R GK  E+L L+ ++  +G +P+ I Y  + +  + S+
Sbjct: 118  MIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSR 161


>ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355483603|gb|AES64806.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  737 bits (1902), Expect = 0.0
 Identities = 350/456 (76%), Positives = 402/456 (88%)
 Frame = +2

Query: 2    LKFNCYTYKCVLQAYLRLNDSGKAFEVYREMRRKGYVLDIFAFNMLLDALAKDEKVEQAY 181
            L+FN Y+YKC+LQ YLRL D  KAF VY +M R GY LDIFAFNMLLDALAKD+KV++AY
Sbjct: 184  LRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAY 243

Query: 182  KVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNTMIQAL 361
            KVF DMKR+HCEPD +TYTIMIRM GK GK DE LALFQ ML KG   N IAYNTMI+AL
Sbjct: 244  KVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEAL 303

Query: 362  AKNRMVDKVIFLFSKMIENGCQPNEFTYSVILNVLVVEGQLGKLDEVIDVSKKYINKSIY 541
            AK RM DK + LFSKM+ENGCQPNEFTYSV+LNVLV EGQL KLD ++++SKKY+NK IY
Sbjct: 304  AKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIY 363

Query: 542  AYLVKTLSKLGHANEAHRLFCNMWSFHDKGDRDAYMSMLESLCDAGRTAEALDLLSKIHE 721
            AY V+TLSKLGH++EAHRLFCNMW+ HDKGD+DAYMSMLESLC +G+ AEA+DLL++ HE
Sbjct: 364  AYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHE 423

Query: 722  KGISTNTVMYNMVFSALGKQKAVSHLHDLYEKMKCNGPLPDIFTYNILISSYGRAGNVVE 901
            K I+T+T+MYN VF+ALG+ K VSH+HDLYEKMK +GP PDIFTYNILISSYGRAG V  
Sbjct: 424  KCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDS 483

Query: 902  AVKLFEEMENSNCKPDIISYNSLINCLGKNGDLDEAHMRFKEMQEVGLNPDVITYSTLIE 1081
            AVK+FEE+ENSNC+PD+ISYNSLINCLGKNGD+DEAHMRFKEMQE GLNPDV+TYSTLIE
Sbjct: 484  AVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIE 543

Query: 1082 CFGKTSRVEMACTLFDEMLAEGCFPNIVTYNILLDCLERCGKSTEALELYAKLKQQGLTP 1261
            CFGKT +VEMAC+LFDEM+AEGC PN+VTYNILLDCLER G++ EA++LYAKLKQQGLTP
Sbjct: 544  CFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTP 603

Query: 1262 DKITYTVLERLQSGSQRKVRIRRQNPITGWVVSPLR 1369
            D ITY VLERLQSG   K+R+RRQNPITGWVVSPL+
Sbjct: 604  DSITYAVLERLQSGRHGKLRVRRQNPITGWVVSPLQ 639



 Score = 93.2 bits (230), Expect = 2e-16
 Identities = 50/156 (32%), Positives = 80/156 (51%)
 Frame = +2

Query: 725  GISTNTVMYNMVFSALGKQKAVSHLHDLYEKMKCNGPLPDIFTYNILISSYGRAGNVVEA 904
            G+  N   Y  +     + +       +Y  M   G   DIF +N+L+ +  +   V +A
Sbjct: 183  GLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKA 242

Query: 905  VKLFEEMENSNCKPDIISYNSLINCLGKNGDLDEAHMRFKEMQEVGLNPDVITYSTLIEC 1084
             K+FE+M+  +C+PD  +Y  +I   GK G  DE+   F+ M E G   ++I Y+T+IE 
Sbjct: 243  YKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEA 302

Query: 1085 FGKTSRVEMACTLFDEMLAEGCFPNIVTYNILLDCL 1192
              K    + A  LF +M+  GC PN  TY++LL+ L
Sbjct: 303  LAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVL 338


>emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score =  729 bits (1881), Expect = 0.0
 Identities = 366/489 (74%), Positives = 406/489 (83%), Gaps = 34/489 (6%)
 Frame = +2

Query: 2    LKFNCYTYKCVLQAYLRLNDSGKAFEVYREMRRKGYVLDIFAFNMLLDALAKDEK----- 166
            L+ NCYTYKC+LQA+LR N+S KAFEVY E+RR+GY LDIFA+NMLLDALAKD K     
Sbjct: 221  LQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKLTWNL 280

Query: 167  ---------------------------VEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKT 265
                                       V+Q Y VF DMKRKHCEPDEYTYTIMIRM GK 
Sbjct: 281  LLVCLQIAELLDCLTVALDNDKIISVEVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKI 340

Query: 266  GKADECLALFQEMLTKGCAPNQIAYNTMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTY 445
            GKADE L LFQEM  KG  PN IAYNTMIQALA NRMVDK IFLFSKM+EN C+PN FT+
Sbjct: 341  GKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTF 400

Query: 446  SVILNVLVVEGQLGKLDEVIDVSKKYINKSIYAYLVKTLSKLGHANEAHRLFCNM--WSF 619
            SVILNVLV EGQLG+LDEV++VS K++NKSIYAYLV+TLSKLGHA+EAHRL      WSF
Sbjct: 401  SVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLLHLQYDWSF 460

Query: 620  HDKGDRDAYMSMLESLCDAGRTAEALDLLSKIHEKGISTNTVMYNMVFSALGKQKAVSHL 799
            HD+GDRDAYMSMLESLCDAG+T EALDLLSKIHEK IST+TVMYN V SALGK K  S L
Sbjct: 461  HDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDL 520

Query: 800  HDLYEKMKCNGPLPDIFTYNILISSYGRAGNVVEAVKLFEEMENSNCKPDIISYNSLINC 979
            HDLYEKMK +GP PDIF+YNILISS+GRAG V EAVK+FEE+ENS+CKPDIIS+NSLINC
Sbjct: 521  HDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINC 580

Query: 980  LGKNGDLDEAHMRFKEMQEVGLNPDVITYSTLIECFGKTSRVEMACTLFDEMLAEGCFPN 1159
            LGKNGD+DEAHMRFKEM+E GL+PDV+TYSTLIECFGKT +VEMAC LFDEMLAEGC PN
Sbjct: 581  LGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPN 640

Query: 1160 IVTYNILLDCLERCGKSTEALELYAKLKQQGLTPDKITYTVLERLQSGSQRKVRIRRQNP 1339
            IVTYNILLDCLER G++ EA++LYAKLKQQGLTPD ITY VLERLQSGS +KVR+RR+NP
Sbjct: 641  IVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERLQSGSHQKVRVRRKNP 700

Query: 1340 ITGWVVSPL 1366
            ITGWVVSPL
Sbjct: 701  ITGWVVSPL 709


>ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
            mitochondrial-like [Cucumis sativus]
          Length = 690

 Score =  726 bits (1874), Expect = 0.0
 Identities = 345/456 (75%), Positives = 401/456 (87%)
 Frame = +2

Query: 2    LKFNCYTYKCVLQAYLRLNDSGKAFEVYREMRRKGYVLDIFAFNMLLDALAKDEKVEQAY 181
            L+ N YTY+C+LQA++R  DS +AF VY EM  KGY LDIFA+NMLLDALAKDE+++++Y
Sbjct: 235  LRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSY 294

Query: 182  KVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNTMIQAL 361
            KVF DMK KHC PDEYTYTIMIRM GK G+A+E LALF+EMLTKGC PN IAYNTMIQAL
Sbjct: 295  KVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQAL 354

Query: 362  AKNRMVDKVIFLFSKMIENGCQPNEFTYSVILNVLVVEGQLGKLDEVIDVSKKYINKSIY 541
            +K+ MVDK I LF  MI+N C+PNEFTYS+ILNVLV EGQLG+LDEV++VS K+INKSIY
Sbjct: 355  SKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIY 414

Query: 542  AYLVKTLSKLGHANEAHRLFCNMWSFHDKGDRDAYMSMLESLCDAGRTAEALDLLSKIHE 721
            AYLV+TLSKLGH++EAHRLFCNMWSFHD GDRDAY+SMLESLC  G+T EA++LLSK+HE
Sbjct: 415  AYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHE 474

Query: 722  KGISTNTVMYNMVFSALGKQKAVSHLHDLYEKMKCNGPLPDIFTYNILISSYGRAGNVVE 901
            KGIST+T+MYN V S LGK K VSHLHDLYEKMK +GP PDIFTYNILISS GR G V E
Sbjct: 475  KGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKE 534

Query: 902  AVKLFEEMENSNCKPDIISYNSLINCLGKNGDLDEAHMRFKEMQEVGLNPDVITYSTLIE 1081
            AV++FEE+E+S+CKPDIISYNSLINCLGKNGD+DEAHMRF EMQ+ GLNPDV+TYSTLIE
Sbjct: 535  AVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIE 594

Query: 1082 CFGKTSRVEMACTLFDEMLAEGCFPNIVTYNILLDCLERCGKSTEALELYAKLKQQGLTP 1261
            CFGKT +VEMA +LFD M+ +GC PNIVTYNILLDCLER G++ E ++LYAKL++QGLTP
Sbjct: 595  CFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTP 654

Query: 1262 DKITYTVLERLQSGSQRKVRIRRQNPITGWVVSPLR 1369
            D ITY +L+RLQSGS RK R+RRQNPITGWVVSPLR
Sbjct: 655  DSITYAILDRLQSGSNRKFRVRRQNPITGWVVSPLR 690