BLASTX nr result
ID: Coptis23_contig00007041
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00007041
(1656 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002271734.1| PREDICTED: LEC14B homolog [Vitis vinifera] 694 0.0
ref|XP_002872801.1| transducin family protein [Arabidopsis lyrat... 676 0.0
ref|NP_192211.2| transducin/WD40 domain-containing protein [Arab... 673 0.0
gb|AAC79104.1| putative WD-repeat protein [Arabidopsis thaliana]... 673 0.0
ref|XP_002320381.1| predicted protein [Populus trichocarpa] gi|2... 670 0.0
>ref|XP_002271734.1| PREDICTED: LEC14B homolog [Vitis vinifera]
Length = 486
Score = 694 bits (1791), Expect = 0.0
Identities = 343/466 (73%), Positives = 392/466 (84%), Gaps = 3/466 (0%)
Frame = +1
Query: 10 CDEGEPAASSINTMP-NKTRVYIDNDIQQITKLGTKPDEHLKRVLPGERVSPSVSTVRML 186
CD G+ + NT NK ++D++I Q+TKL + P E L +++PG+R SP VSTV+ML
Sbjct: 27 CDAGKDIHGNDNTERLNKELNHLDHEISQLTKLRSGPHECLSQIIPGKRDSP-VSTVKML 85
Query: 187 AGREFNYSGKGRFSFADCRHVVSRYLPVYGPWEIDRFNTRAYVSQFSADGSLLVAGSQGS 366
AGRE NYSG+GRFS ADC H++SRYLPV GPW +D+ +RAYVSQFSADGSL VAG QGS
Sbjct: 86 AGREGNYSGRGRFSSADCCHMLSRYLPVNGPWLVDQMTSRAYVSQFSADGSLFVAGFQGS 145
Query: 367 HIKIYNVEKDWKVQKDILAKSLRWTVTDTSLSPDQRYLVYASMSPFVHIVDIGSATKESH 546
HI+IYNV++ WKVQK+ILAKSLRWTVTDTSLSPDQR+LVYASMSP VHIV+IGSA ES
Sbjct: 146 HIRIYNVDRGWKVQKNILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVNIGSAATESL 205
Query: 547 ANVTEIHDGLDFSADGDGEYSFGIFSVKFSTDGRELVAGSSDDSIYVYDLVSNKLTLRIA 726
AN+TEIHDGLDFSA D YSFGIFSVKFSTDGRELVAGSSDDSIYVYDL +NKL+LRI
Sbjct: 206 ANITEIHDGLDFSAADDEGYSFGIFSVKFSTDGRELVAGSSDDSIYVYDLEANKLSLRIL 265
Query: 727 AHSSDVNTVCFADETGHLIYSGSDDNLCKVWDRRC-IGKGKPAGVLMGHLEGITFIDSRG 903
AH+SDVNTVCFADE+GHLIYSGSDD+LCKVWDRRC I KGKPAGVLMGHLEGITFIDSRG
Sbjct: 266 AHTSDVNTVCFADESGHLIYSGSDDSLCKVWDRRCFISKGKPAGVLMGHLEGITFIDSRG 325
Query: 904 DGRYFISNGKDQTIKLWDIRKMPSNAXXXXXXXXGMQFRNYEWDYRWMEYPPRARNMKHP 1083
DGR+ ISN KDQ+IKLWDIRKM SNA FRNYEWDYRWM+YP +AR +KHP
Sbjct: 326 DGRHLISNSKDQSIKLWDIRKMSSNATCTPG------FRNYEWDYRWMDYPTQARELKHP 379
Query: 1084 CDQSLSTYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSNDGCVYIYDLVSGNQVARLDHHS 1263
CDQSLSTY+GHSVLRTLIRCYFSP+YSTGQKYIY+GS+D C+YIYDL++G QVA L+HH
Sbjct: 380 CDQSLSTYKGHSVLRTLIRCYFSPSYSTGQKYIYSGSSDSCIYIYDLLTGAQVATLEHHK 439
Query: 1264 QTVRDCSWHPFNPMLVSCSWDGVIARGEFPGTGE-KVRRKRIRRKY 1398
VRDC+WHP P+LVS SWDG I + EFPG GE + +KRIRRKY
Sbjct: 440 SVVRDCNWHPNYPILVSSSWDGDIVKWEFPGNGEPPLIKKRIRRKY 485
>ref|XP_002872801.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]
gi|297318638|gb|EFH49060.1| transducin family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 493
Score = 676 bits (1745), Expect = 0.0
Identities = 330/470 (70%), Positives = 387/470 (82%), Gaps = 7/470 (1%)
Frame = +1
Query: 10 CDEGEP----AASSINTMPNKTRVYIDNDIQQITKLGTKPDEHLKRVLPGERVSPSVSTV 177
CD G+ +SS + ++ +D++I Q+TKL + P + R +PG P VSTV
Sbjct: 27 CDTGKDFCGVGSSSASHRSSEHLADLDHEISQVTKLKSSPHQRYSREVPGRHQLP-VSTV 85
Query: 178 RMLAGREFNYSGKGRFSFADCRHVVSRYLPVYGPWEIDRFNTRAYVSQFSADGSLLVAGS 357
RMLAGRE N+SG+GRFS ADC H++SRYLP+ GPW +D+ ++RAYVSQFS DGSL +AG
Sbjct: 86 RMLAGRESNFSGRGRFSAADCCHMLSRYLPIKGPWLVDQMDSRAYVSQFSTDGSLFIAGF 145
Query: 358 QGSHIKIYNVEKDWKVQKDILAKSLRWTVTDTSLSPDQRYLVYASMSPFVHIVDIGSATK 537
QGS I+IYNVEK WKVQKDILAKSLRWTVTDTSLSPDQR LVYASMSP VHIVD+GS T
Sbjct: 146 QGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRNLVYASMSPIVHIVDVGSGTT 205
Query: 538 ESHANVTEIHDGLDFSADGDGEYSFGIFSVKFSTDGRELVAGSSDDSIYVYDLVSNKLTL 717
ESHANVTEIHDGLDFS+D DG YSFGIFSVKFSTDGR++VAGSSDDSIYVYDL +N+++L
Sbjct: 206 ESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGRDIVAGSSDDSIYVYDLEANRVSL 265
Query: 718 RIAAHSSDVNTVCFADETGHLIYSGSDDNLCKVWDRRC-IGKGKPAGVLMGHLEGITFID 894
R AH+SDVNTVCFADE+G+LI SGSDDNLCKVWDRRC IG+ KPAGVL+GHLEG+TFID
Sbjct: 266 RTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFID 325
Query: 895 SRGDGRYFISNGKDQTIKLWDIRKMPSNAXXXXXXXXGMQFRNYEWDYRWMEYPPRARNM 1074
SRGDGRYFISNGKDQTIKLWDIRKM S+A RNYEWDYRWM+YP AR++
Sbjct: 326 SRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEV-----LRNYEWDYRWMDYPTEARDL 380
Query: 1075 KHPCDQSLSTYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSNDGCVYIYDLVSGNQVARLD 1254
KHP DQS+STY+GHSVLRTLIRCYFSPA+STGQKYIYTGSND VYIYDLVSG++VA L
Sbjct: 381 KHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLK 440
Query: 1255 HHSQTVRDCSWHPFNPMLVSCSWDGVIARGEFPGTGEK--VRRKRIRRKY 1398
HHS VRDC+WHP+ P L+S SWDG + + EFPG+GE + +KR+RR++
Sbjct: 441 HHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGEAPIMSKKRVRRRH 490
>ref|NP_192211.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana]
gi|334186335|ref|NP_001190666.1| transducin/WD40
domain-containing protein [Arabidopsis thaliana]
gi|20466538|gb|AAM20586.1| putative WD-repeat protein
[Arabidopsis thaliana] gi|23198298|gb|AAN15676.1|
putative WD-repeat protein [Arabidopsis thaliana]
gi|332656861|gb|AEE82261.1| transducin/WD40
domain-containing protein [Arabidopsis thaliana]
gi|332656862|gb|AEE82262.1| transducin/WD40
domain-containing protein [Arabidopsis thaliana]
Length = 493
Score = 673 bits (1737), Expect = 0.0
Identities = 330/470 (70%), Positives = 386/470 (82%), Gaps = 7/470 (1%)
Frame = +1
Query: 10 CDEGEPA----ASSINTMPNKTRVYIDNDIQQITKLGTKPDEHLKRVLPGERVSPSVSTV 177
CD G+ +SS + ++ +D++I Q+TKL + P + R +PG P VSTV
Sbjct: 27 CDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVTKLKSSPHQRYSREVPGRHQLP-VSTV 85
Query: 178 RMLAGREFNYSGKGRFSFADCRHVVSRYLPVYGPWEIDRFNTRAYVSQFSADGSLLVAGS 357
RMLAGRE N+SG+GRFS ADC H++SRYLP GPW +D+ ++RAYVSQFS DGSL +AG
Sbjct: 86 RMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQMDSRAYVSQFSTDGSLFIAGF 145
Query: 358 QGSHIKIYNVEKDWKVQKDILAKSLRWTVTDTSLSPDQRYLVYASMSPFVHIVDIGSATK 537
QGS I+IYNVEK WKVQKDILAKSLRWTVTDTSLSPDQR LVYASMSP VHIVD+GS +
Sbjct: 146 QGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRNLVYASMSPIVHIVDVGSGST 205
Query: 538 ESHANVTEIHDGLDFSADGDGEYSFGIFSVKFSTDGRELVAGSSDDSIYVYDLVSNKLTL 717
ESHANVTEIHDGLDFS+D DG YSFGIFSVKFSTDGRE+VAGSSDDSIYVYDL +N+++L
Sbjct: 206 ESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVVAGSSDDSIYVYDLEANRVSL 265
Query: 718 RIAAHSSDVNTVCFADETGHLIYSGSDDNLCKVWDRRC-IGKGKPAGVLMGHLEGITFID 894
R AH+SDVNTVCFADE+G+LI SGSDDNLCKVWDRRC IG+ KPAGVL+GHLEG+TFID
Sbjct: 266 RTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFID 325
Query: 895 SRGDGRYFISNGKDQTIKLWDIRKMPSNAXXXXXXXXGMQFRNYEWDYRWMEYPPRARNM 1074
SRGDGRYFISNGKDQTIKLWDIRKM S+A RNYEWDYRWM+YP AR++
Sbjct: 326 SRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEV-----LRNYEWDYRWMDYPTEARDL 380
Query: 1075 KHPCDQSLSTYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSNDGCVYIYDLVSGNQVARLD 1254
KHP DQS+STY+GHSVLRTLIRCYFSPA+STGQKYIYTGSND VYIYDLVSG++VA L
Sbjct: 381 KHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLK 440
Query: 1255 HHSQTVRDCSWHPFNPMLVSCSWDGVIARGEFPGTGEK--VRRKRIRRKY 1398
HHS VRDC+WHP+ P L+S SWDG + + EFPG+GE + +KR+RR++
Sbjct: 441 HHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGEAPIMSKKRVRRRH 490
>gb|AAC79104.1| putative WD-repeat protein [Arabidopsis thaliana]
gi|7269787|emb|CAB77787.1| putative WD-repeat protein
[Arabidopsis thaliana]
Length = 555
Score = 673 bits (1737), Expect = 0.0
Identities = 330/470 (70%), Positives = 386/470 (82%), Gaps = 7/470 (1%)
Frame = +1
Query: 10 CDEGEPA----ASSINTMPNKTRVYIDNDIQQITKLGTKPDEHLKRVLPGERVSPSVSTV 177
CD G+ +SS + ++ +D++I Q+TKL + P + R +PG P VSTV
Sbjct: 89 CDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVTKLKSSPHQRYSREVPGRHQLP-VSTV 147
Query: 178 RMLAGREFNYSGKGRFSFADCRHVVSRYLPVYGPWEIDRFNTRAYVSQFSADGSLLVAGS 357
RMLAGRE N+SG+GRFS ADC H++SRYLP GPW +D+ ++RAYVSQFS DGSL +AG
Sbjct: 148 RMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQMDSRAYVSQFSTDGSLFIAGF 207
Query: 358 QGSHIKIYNVEKDWKVQKDILAKSLRWTVTDTSLSPDQRYLVYASMSPFVHIVDIGSATK 537
QGS I+IYNVEK WKVQKDILAKSLRWTVTDTSLSPDQR LVYASMSP VHIVD+GS +
Sbjct: 208 QGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRNLVYASMSPIVHIVDVGSGST 267
Query: 538 ESHANVTEIHDGLDFSADGDGEYSFGIFSVKFSTDGRELVAGSSDDSIYVYDLVSNKLTL 717
ESHANVTEIHDGLDFS+D DG YSFGIFSVKFSTDGRE+VAGSSDDSIYVYDL +N+++L
Sbjct: 268 ESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVVAGSSDDSIYVYDLEANRVSL 327
Query: 718 RIAAHSSDVNTVCFADETGHLIYSGSDDNLCKVWDRRC-IGKGKPAGVLMGHLEGITFID 894
R AH+SDVNTVCFADE+G+LI SGSDDNLCKVWDRRC IG+ KPAGVL+GHLEG+TFID
Sbjct: 328 RTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFID 387
Query: 895 SRGDGRYFISNGKDQTIKLWDIRKMPSNAXXXXXXXXGMQFRNYEWDYRWMEYPPRARNM 1074
SRGDGRYFISNGKDQTIKLWDIRKM S+A RNYEWDYRWM+YP AR++
Sbjct: 388 SRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEV-----LRNYEWDYRWMDYPTEARDL 442
Query: 1075 KHPCDQSLSTYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSNDGCVYIYDLVSGNQVARLD 1254
KHP DQS+STY+GHSVLRTLIRCYFSPA+STGQKYIYTGSND VYIYDLVSG++VA L
Sbjct: 443 KHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLK 502
Query: 1255 HHSQTVRDCSWHPFNPMLVSCSWDGVIARGEFPGTGEK--VRRKRIRRKY 1398
HHS VRDC+WHP+ P L+S SWDG + + EFPG+GE + +KR+RR++
Sbjct: 503 HHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGEAPIMSKKRVRRRH 552
>ref|XP_002320381.1| predicted protein [Populus trichocarpa] gi|222861154|gb|EEE98696.1|
predicted protein [Populus trichocarpa]
Length = 488
Score = 670 bits (1728), Expect = 0.0
Identities = 338/468 (72%), Positives = 378/468 (80%), Gaps = 6/468 (1%)
Frame = +1
Query: 10 CDEGE--PAASSINTMPNKTRVYIDNDIQQITKLGTKPDEHLKRVLPGERVSPSVSTVRM 183
CD G+ P A S N +D++I Q+TKL + P + L ++PG S SVSTV+M
Sbjct: 27 CDGGKTIPEAGSSKRASNWLN-NLDHEIAQVTKLKSSPHKQLAELVPGMHKS-SVSTVKM 84
Query: 184 LAGREFNYSGKGRFSFADCRHVVSRYLPVYGPWEIDRFNTRAYVSQFSADGSLLVAGSQG 363
L GRE NYS +GRFS AD H++SRYLPV GPW +D+ +TRAYVSQFSADGSL VAG QG
Sbjct: 85 LVGREANYSARGRFSAADRCHMLSRYLPVNGPWLVDQMSTRAYVSQFSADGSLFVAGFQG 144
Query: 364 SHIKIYNVEKDWKVQKDILAKSLRWTVTDTSLSPDQRYLVYASMSPFVHIVDIGSATKES 543
S+I+IYNVEK WKVQK+ILAKSLRWTVTDTSLSPDQR+LVYASMSP VHIVD GSA ES
Sbjct: 145 SYIRIYNVEKGWKVQKNILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDAGSAETES 204
Query: 544 HANVTEIHDGLDFSADGDGEYSFGIFSVKFSTDGRELVAGSSDDSIYVYDLVSNKLTLRI 723
ANVTE HDGLDFS+ GDG YSFGIFSVKFSTDGRELVAGS+DDSIYVYDL NKL+LRI
Sbjct: 205 LANVTEFHDGLDFSS-GDGGYSFGIFSVKFSTDGRELVAGSNDDSIYVYDLEQNKLSLRI 263
Query: 724 AAHSSDVNTVCFADETGHLIYSGSDDNLCKVWDRRC-IGKGKPAGVLMGHLEGITFIDSR 900
AH+SDVNTVCFADE+GHLI+SGSDDNLCKVWDRRC I KGKPAGVL GHLEGITFIDS
Sbjct: 264 LAHTSDVNTVCFADESGHLIFSGSDDNLCKVWDRRCFIAKGKPAGVLTGHLEGITFIDSH 323
Query: 901 GDGRYFISNGKDQTIKLWDIRKMPSNAXXXXXXXXGMQFRNYEWDYRWMEYPPRARNMKH 1080
GDGRYFISNGKDQTIKLWDIRKM NA RNYEWDYRWM+YP AR++KH
Sbjct: 324 GDGRYFISNGKDQTIKLWDIRKMAPNATSYSG------LRNYEWDYRWMDYPYEARDLKH 377
Query: 1081 PCDQSLSTYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSNDGCVYIYDLVSGNQVARLDHH 1260
PCDQS++TY+GHSVLRTLIRCYFSP YSTGQKYIYTGS+D CVYIYDLV+G V+ L HH
Sbjct: 378 PCDQSVATYKGHSVLRTLIRCYFSPVYSTGQKYIYTGSHDSCVYIYDLVTGELVSLLQHH 437
Query: 1261 SQTVRDCSWHPFNPMLVSCSWDGVIARGEFPGTGE---KVRRKRIRRK 1395
VRDCSWHP+ PMLVS SWDG + + EFPG GE +KRIRR+
Sbjct: 438 KSPVRDCSWHPYYPMLVSSSWDGDVVKWEFPGNGEAPVPSTKKRIRRR 485