BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00007001
         (224 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308919.1| predicted protein [Populus trichocarpa] gi|2...    79   3e-13
ref|XP_002276914.1| PREDICTED: U4/U6 small nuclear ribonucleopro...    77   1e-12
emb|CAN64891.1| hypothetical protein VITISV_016440 [Vitis vinifera]    77   1e-12
ref|XP_003535893.1| PREDICTED: U4/U6 small nuclear ribonucleopro...    76   3e-12
ref|XP_002530100.1| U4/U6 small nuclear ribonucleoprotein Prp4, ...    75   6e-12

>ref|XP_002308919.1| predicted protein [Populus trichocarpa] gi|222854895|gb|EEE92442.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 43/74 (58%), Positives = 51/74 (68%), Gaps = 13/74 (17%)
 Frame = -2

Query: 223 RMIMVKLDNEGQLDRLLKAQSEEGDQT-------------YPFYTEGSKELLEARIDIAK 83
           RM+M KLD+EGQL++L+K   EE   +             YPFYTEGSKELL+ARIDIAK
Sbjct: 149 RMLMAKLDSEGQLEKLMKVHEEEEAASTAAAEDAEEEFVQYPFYTEGSKELLDARIDIAK 208

Query: 82  YSIMMAALRLKRTR 41
           YSI  AALRL+R R
Sbjct: 209 YSISKAALRLQRAR 222


>ref|XP_002276914.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
           protein-like [Vitis vinifera]
          Length = 577

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 51/98 (52%), Positives = 61/98 (62%), Gaps = 24/98 (24%)
 Frame = -2

Query: 223 RMIMVKLDNEGQLDRLLKAQSEEG-----------DQT--YPFYTEGSKELLEARIDIAK 83
           RMIM KLD EGQL++L+KA  EE            ++T  YPFYTEGSK LLEAR++IAK
Sbjct: 177 RMIMAKLDAEGQLEKLMKAHEEEEAAAPVAMEEVEEETLQYPFYTEGSKSLLEARVEIAK 236

Query: 82  YSIMMAALRLKRTR--------DLD---NRVMKQAGGL 2
           YSI  AA RL R R        DLD   + V+K+AG L
Sbjct: 237 YSIKRAASRLYRARRKRDDPDEDLDAEMDWVLKEAGSL 274


>emb|CAN64891.1| hypothetical protein VITISV_016440 [Vitis vinifera]
          Length = 1088

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 51/98 (52%), Positives = 61/98 (62%), Gaps = 24/98 (24%)
 Frame = -2

Query: 223 RMIMVKLDNEGQLDRLLKAQSEEG-----------DQT--YPFYTEGSKELLEARIDIAK 83
           RMIM KLD EGQL++L+KA  EE            ++T  YPFYTEGSK LLEAR++IAK
Sbjct: 688 RMIMAKLDAEGQLEKLMKAHEEEEAAAPVAMEEVEEETLQYPFYTEGSKSLLEARVEIAK 747

Query: 82  YSIMMAALRLKRTR--------DLD---NRVMKQAGGL 2
           YSI  AA RL R R        DLD   + V+K+AG L
Sbjct: 748 YSIKRAASRLYRARRKRDDPDEDLDAEMDWVLKEAGSL 785


>ref|XP_003535893.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
           protein-like [Glycine max]
          Length = 570

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 48/97 (49%), Positives = 59/97 (60%), Gaps = 23/97 (23%)
 Frame = -2

Query: 223 RMIMVKLDNEGQLDRLLKAQSEEG------------DQTYPFYTEGSKELLEARIDIAKY 80
           RMIM KLD EGQL++L+KA  EE             +  YPFYTEGSK LL+ARI IAKY
Sbjct: 173 RMIMAKLDAEGQLEKLMKAHEEEEAAASASIDEAEEELQYPFYTEGSKALLDARIYIAKY 232

Query: 79  SIMMAALRLKRTR--------DLD---NRVMKQAGGL 2
           S+  AALR++R +        D+D   N  +KQAG L
Sbjct: 233 SLTRAALRIQRAQRRRDDPDEDMDAEMNWALKQAGNL 269


>ref|XP_002530100.1| U4/U6 small nuclear ribonucleoprotein Prp4, putative [Ricinus
           communis] gi|223530411|gb|EEF32299.1| U4/U6 small
           nuclear ribonucleoprotein Prp4, putative [Ricinus
           communis]
          Length = 541

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 25/97 (25%)
 Frame = -2

Query: 223 RMIMVKLDNEGQLDRLLKAQSEE-----------GDQT---YPFYTEGSKELLEARIDIA 86
           RM+M KLD+EGQL++L+ A  E+           G+     YPFYTEGSKELL ARIDIA
Sbjct: 141 RMLMAKLDSEGQLEKLMIAHEEDVASATAGVMEDGEDEVLEYPFYTEGSKELLNARIDIA 200

Query: 85  KYSIMMAALRLKRTR--------DLDNR---VMKQAG 8
           KYS++ A+LR++R R        D+D+    V++QAG
Sbjct: 201 KYSVVKASLRIQRARRKRDDPDEDVDSEIDWVLEQAG 237