BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006991
         (508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525033.1| conserved hypothetical protein [Ricinus comm...   122   2e-26
gb|AFK45778.1| unknown [Medicago truncatula]                          119   3e-25
ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 ...   119   3e-25
ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II su...   117   7e-25
ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213...   117   7e-25

>ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
           gi|223535695|gb|EEF37360.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 203

 Score =  122 bits (307), Expect = 2e-26
 Identities = 60/96 (62%), Positives = 74/96 (77%)
 Frame = -1

Query: 505 KCLMDCEAEAILSKIQEQMVILSDDPMIKLPVSFHKGLQYAKSSCGYSNVESARRVLETL 326
           KCLMDCEA  +L  IQEQMV+LS DP IKLPVSF + LQ+A++   ++N +S RR+LE L
Sbjct: 88  KCLMDCEAAQVLQGIQEQMVLLSRDPTIKLPVSFDRALQHARTGARFTNPQSVRRILEGL 147

Query: 325 KANNKVSESEICLIGNICPDGVDELFALMPSLKGNK 218
           K +  VSE EIC I N+CPDGVDE+FAL+PSLK  K
Sbjct: 148 KKHG-VSEGEICTIANVCPDGVDEVFALVPSLKSKK 182


>gb|AFK45778.1| unknown [Medicago truncatula]
          Length = 201

 Score =  119 bits (298), Expect = 3e-25
 Identities = 62/105 (59%), Positives = 75/105 (71%), Gaps = 2/105 (1%)
 Frame = -1

Query: 505 KCLMDCEAEAILSKIQEQMVILSDDPMIKLPVSFHKGLQYAKSSCG--YSNVESARRVLE 332
           KCLMDCEA  +L  IQ+QMV LS DP IK+P SF KGL YAKSS    YSN ES R  LE
Sbjct: 84  KCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRHTLE 143

Query: 331 TLKANNKVSESEICLIGNICPDGVDELFALMPSLKGNKGKNERAV 197
            L  N+ ++ESEIC+I N+CP+  DE+FAL+PSLK  +G N + V
Sbjct: 144 PL-MNHDLTESEICVIANVCPETADEVFALLPSLKSKRGINSQPV 187


>ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
           gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4
           [Medicago truncatula] gi|355483391|gb|AES64594.1|
           DNA-directed RNA polymerase II subunit rpb4 [Medicago
           truncatula]
          Length = 223

 Score =  119 bits (298), Expect = 3e-25
 Identities = 62/105 (59%), Positives = 75/105 (71%), Gaps = 2/105 (1%)
 Frame = -1

Query: 505 KCLMDCEAEAILSKIQEQMVILSDDPMIKLPVSFHKGLQYAKSSCG--YSNVESARRVLE 332
           KCLMDCEA  +L  IQ+QMV LS DP IK+P SF KGL YAKSS    YSN ES R  LE
Sbjct: 106 KCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRHTLE 165

Query: 331 TLKANNKVSESEICLIGNICPDGVDELFALMPSLKGNKGKNERAV 197
            L  N+ ++ESEIC+I N+CP+  DE+FAL+PSLK  +G N + V
Sbjct: 166 PL-MNHDLTESEICVIANVCPETADEVFALLPSLKSKRGINSQPV 209


>ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
           [Cucumis sativus]
          Length = 220

 Score =  117 bits (294), Expect = 7e-25
 Identities = 59/98 (60%), Positives = 72/98 (73%)
 Frame = -1

Query: 505 KCLMDCEAEAILSKIQEQMVILSDDPMIKLPVSFHKGLQYAKSSCGYSNVESARRVLETL 326
           +CLMDCEA  +L  IQ+QMV LS DP IK+P SF +GLQYAK +  Y N ES R VLETL
Sbjct: 106 QCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETL 165

Query: 325 KANNKVSESEICLIGNICPDGVDELFALMPSLKGNKGK 212
           K    V++SEIC+I N+CPD  DE+FAL+PSLK  + K
Sbjct: 166 KKYG-VTDSEICVIANVCPDTTDEVFALLPSLKRKRSK 202


>ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
          Length = 242

 Score =  117 bits (294), Expect = 7e-25
 Identities = 59/98 (60%), Positives = 72/98 (73%)
 Frame = -1

Query: 505 KCLMDCEAEAILSKIQEQMVILSDDPMIKLPVSFHKGLQYAKSSCGYSNVESARRVLETL 326
           +CLMDCEA  +L  IQ+QMV LS DP IK+P SF +GLQYAK +  Y N ES R VLETL
Sbjct: 106 QCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETL 165

Query: 325 KANNKVSESEICLIGNICPDGVDELFALMPSLKGNKGK 212
           K    V++SEIC+I N+CPD  DE+FAL+PSLK  + K
Sbjct: 166 KKYG-VTDSEICVIANVCPDTTDEVFALLPSLKRKRSK 202