BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006971
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271987.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vit...   116   2e-24
emb|CBI34215.3| unnamed protein product [Vitis vinifera]              116   2e-24
emb|CAN65206.1| hypothetical protein VITISV_016718 [Vitis vinifera]   116   2e-24
ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus co...   106   2e-21
ref|XP_002319052.1| predicted protein [Populus trichocarpa] gi|2...   103   2e-20

>ref|XP_002271987.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vitis vinifera]
          Length = 950

 Score =  116 bits (291), Expect = 2e-24
 Identities = 58/105 (55%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
 Frame = -2

Query: 314  RRHQARDRPQVSGAISGPHLGEASHRLLRNTLQMKP---STSALLDYPANRYHVPNNHTV 144
            RR Q R+RPQV  AISGP LGEA+HRLL+NTL +KP   S+  LL  P    ++P+N+ V
Sbjct: 723  RRQQGRERPQVPRAISGPLLGEAAHRLLKNTLNIKPNNTSSGMLLQTPYR--NMPSNYVV 780

Query: 143  DRPRPAGPSGYERGYGQDQNYFHGNFSNPRGTIVNSRSAPSYNEM 9
            +RPRPAGPSGYE+G+  D NY++G++ NPRG +   R  PS N M
Sbjct: 781  NRPRPAGPSGYEKGFNGDSNYYYGHYDNPRGALSIPRFPPSPNNM 825


>emb|CBI34215.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  116 bits (291), Expect = 2e-24
 Identities = 58/105 (55%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
 Frame = -2

Query: 314  RRHQARDRPQVSGAISGPHLGEASHRLLRNTLQMKP---STSALLDYPANRYHVPNNHTV 144
            RR Q R+RPQV  AISGP LGEA+HRLL+NTL +KP   S+  LL  P    ++P+N+ V
Sbjct: 965  RRQQGRERPQVPRAISGPLLGEAAHRLLKNTLNIKPNNTSSGMLLQTPYR--NMPSNYVV 1022

Query: 143  DRPRPAGPSGYERGYGQDQNYFHGNFSNPRGTIVNSRSAPSYNEM 9
            +RPRPAGPSGYE+G+  D NY++G++ NPRG +   R  PS N M
Sbjct: 1023 NRPRPAGPSGYEKGFNGDSNYYYGHYDNPRGALSIPRFPPSPNNM 1067


>emb|CAN65206.1| hypothetical protein VITISV_016718 [Vitis vinifera]
          Length = 389

 Score =  116 bits (291), Expect = 2e-24
 Identities = 58/105 (55%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
 Frame = -2

Query: 314 RRHQARDRPQVSGAISGPHLGEASHRLLRNTLQMKP---STSALLDYPANRYHVPNNHTV 144
           RR Q R+RPQV  AISGP LGEA+HRLL+NTL +KP   S+  LL  P    ++P+N+ V
Sbjct: 137 RRQQGRERPQVPRAISGPLLGEAAHRLLKNTLNIKPNNTSSGMLLQTPYR--NMPSNYVV 194

Query: 143 DRPRPAGPSGYERGYGQDQNYFHGNFSNPRGTIVNSRSAPSYNEM 9
           +RPRPAGPSGYE+G+  D NY++G++ NPRG +   R  PS N M
Sbjct: 195 NRPRPAGPSGYEKGFNGDSNYYYGHYDNPRGALSIPRFPPSPNNM 239


>ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223548213|gb|EEF49704.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 964

 Score =  106 bits (264), Expect = 2e-21
 Identities = 52/97 (53%), Positives = 71/97 (73%), Gaps = 2/97 (2%)
 Frame = -2

Query: 314  RRHQARDRPQVSGAISGPHLGEASHRLLRNTLQMKP--STSALLDYPANRYHVPNNHTVD 141
            RR Q R+RPQV+ AI+GP LGEA+HRL++NTL ++P  S+S  L+    R ++P N T +
Sbjct: 735  RRQQGRERPQVARAIAGPLLGEAAHRLVKNTLNIRPNGSSSKFLEQQTYR-NIPGNSTFN 793

Query: 140  RPRPAGPSGYERGYGQDQNYFHGNFSNPRGTIVNSRS 30
            RPRPAGPSGYERGY  D NY++G+ +  +G + N RS
Sbjct: 794  RPRPAGPSGYERGYSNDPNYYYGHHNYQQGLMSNPRS 830


>ref|XP_002319052.1| predicted protein [Populus trichocarpa] gi|222857428|gb|EEE94975.1|
            predicted protein [Populus trichocarpa]
          Length = 965

 Score =  103 bits (256), Expect = 2e-20
 Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
 Frame = -2

Query: 314  RRHQARDRPQVSGAISGPHLGEASHRLLRNTLQMKPSTSALLDYPANRYH-VPNNHTVDR 138
            RR Q R+RPQV  AI+GP LG+A+HRL++NTL +KP+ S+   +    YH +P N+T  R
Sbjct: 734  RRQQGRERPQVQRAIAGPFLGDAAHRLVKNTLNIKPNGSSSRVFDQQLYHNIPGNYTFYR 793

Query: 137  PRPAGPSGYERGYGQDQNYFHGNFSNPRGTIVNSR 33
            PRPAGP+GY RGY  D NY +   SN +G + N R
Sbjct: 794  PRPAGPAGYGRGYWDDPNYHYAQHSNQQGLMSNPR 828