BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006957
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004171935.1| PREDICTED: mediator of RNA polymerase II tra...    64   1e-08
ref|XP_004143621.1| PREDICTED: mediator of RNA polymerase II tra...    64   1e-08
ref|XP_004140765.1| PREDICTED: mediator of RNA polymerase II tra...    64   1e-08
ref|XP_003552116.1| PREDICTED: rRNA 2'-O-methyltransferase fibri...    60   2e-07
ref|XP_003537503.1| PREDICTED: rRNA 2'-O-methyltransferase fibri...    60   2e-07

>ref|XP_004171935.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           36a-like, partial [Cucumis sativus]
          Length = 93

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/36 (86%), Positives = 32/36 (88%)
 Frame = +2

Query: 5   DQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVAS 112
           DQFKP EQVTLEPFERDHACVVGIYR P KKQK A+
Sbjct: 59  DQFKPTEQVTLEPFERDHACVVGIYRAP-KKQKAAA 93


>ref|XP_004143621.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           36a-like [Cucumis sativus]
          Length = 280

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/36 (86%), Positives = 32/36 (88%)
 Frame = +2

Query: 5   DQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVAS 112
           DQFKP EQVTLEPFERDHACVVGIYR P KKQK A+
Sbjct: 246 DQFKPTEQVTLEPFERDHACVVGIYRAP-KKQKAAA 280


>ref|XP_004140765.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           36a-like [Cucumis sativus]
           gi|449485505|ref|XP_004157191.1| PREDICTED: mediator of
           RNA polymerase II transcription subunit 36a-like
           [Cucumis sativus]
          Length = 309

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/36 (86%), Positives = 32/36 (88%)
 Frame = +2

Query: 5   DQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVAS 112
           DQFKP EQVTLEPFERDHACVVGIYR P KKQK A+
Sbjct: 273 DQFKPTEQVTLEPFERDHACVVGIYRAP-KKQKAAA 307


>ref|XP_003552116.1| PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine
           max]
          Length = 313

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/35 (80%), Positives = 29/35 (82%)
 Frame = +2

Query: 5   DQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVA 109
           DQFKP EQVTLEPFERDHACVVG YR P KK+  A
Sbjct: 278 DQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAA 312


>ref|XP_003537503.1| PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine
           max]
          Length = 315

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/35 (80%), Positives = 29/35 (82%)
 Frame = +2

Query: 5   DQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVA 109
           DQFKP EQVTLEPFERDHACVVG YR P KK+  A
Sbjct: 280 DQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAA 314