BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006955
         (1466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|2...   333   5e-89
ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|2...   329   1e-87
ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putati...   328   2e-87
ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotei...   326   1e-86
gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium h...   325   2e-86

>ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|222841164|gb|EEE78711.1|
            predicted protein [Populus trichocarpa]
          Length = 284

 Score =  333 bits (855), Expect = 5e-89
 Identities = 182/284 (64%), Positives = 206/284 (72%)
 Frame = -1

Query: 1370 LTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENFPFL 1191
            LTADLIWKSPHFFNA+ +RELDLRGNKI V+ENLGATEDQFDT+DLSDNEIVKLEN P+L
Sbjct: 4    LTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENMPYL 63

Query: 1190 ARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXXXXXVEIDPLASLTKLRFLTLLDN 1011
             RLG               IG+YLPK               EIDPL+SL KL+FL+LLDN
Sbjct: 64   NRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSLLDN 123

Query: 1010 NITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXEPAKTFTPGE 831
             ITKKPNYRLYVI KLKSLRVLDF KVK KER EAE+LF+SK        E  KTFTPGE
Sbjct: 124  TITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFTPGE 183

Query: 830  LQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLKIPG 651
            + N+PE  +E Q P V APTPEQIIAIKAAIVNSQTLEEVARLEKAL SGQLPADLKI  
Sbjct: 184  IPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLKILD 243

Query: 650  DEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 519
            D  +  V+ QDDKM  D++N A  + ++ E Q+ N+    MEQ+
Sbjct: 244  DTGSNSVKEQDDKMATDSQNEA--EPNNLEEQKDNEA-TPMEQE 284


>ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|222846626|gb|EEE84173.1|
            predicted protein [Populus trichocarpa]
          Length = 284

 Score =  329 bits (844), Expect = 1e-87
 Identities = 182/284 (64%), Positives = 203/284 (71%)
 Frame = -1

Query: 1370 LTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENFPFL 1191
            LTADL+WKSPHFFNA+ +RELDLRGNKI V+ENLGATEDQFDT+DLSDNEIVKLEN P+L
Sbjct: 4    LTADLVWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENMPYL 63

Query: 1190 ARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXXXXXVEIDPLASLTKLRFLTLLDN 1011
             RLG               IG+YLPK               EIDPLASL KL FL+LLDN
Sbjct: 64   NRLGTLIINNNRITRINPNIGEYLPKLHTLVLINNRLVNLAEIDPLASLPKLHFLSLLDN 123

Query: 1010 NITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXEPAKTFTPGE 831
            NITKKPNYRLYVI KLKSLRVLDF KVK KER EAE+LFASK        E  KTFTPGE
Sbjct: 124  NITKKPNYRLYVIHKLKSLRVLDFKKVKGKERAEAEHLFASKEVEEEARRESVKTFTPGE 183

Query: 830  LQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLKIPG 651
            + NV E  +E Q P V APTP+QIIAIKAAIVNSQTLEEVARLEKAL SGQLPADLKI  
Sbjct: 184  VPNVLEGAEEQQAPKVVAPTPDQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLKILD 243

Query: 650  DEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 519
               +  V+ QDDKM  D +N A  + ++ E Q+ N+    MEQ+
Sbjct: 244  GTGSNSVKEQDDKMATDNQNEA--EPNNLEEQKDNEA-TPMEQE 284


>ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis]
            gi|223548673|gb|EEF50164.1| U2 small nuclear
            ribonucleoprotein A, putative [Ricinus communis]
          Length = 287

 Score =  328 bits (841), Expect = 2e-87
 Identities = 179/285 (62%), Positives = 204/285 (71%), Gaps = 1/285 (0%)
 Frame = -1

Query: 1370 LTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENFPFL 1191
            LTADLIWKSPHFFNA+ +RELDLRGNKI V+ENLGATEDQFDT+DLSDNEIVKLEN P+L
Sbjct: 4    LTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENMPYL 63

Query: 1190 ARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXXXXXVEIDPLASLTKLRFLTLLDN 1011
             RLG               IG++LPK              VEIDPLASL KL+FL+LLDN
Sbjct: 64   TRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDN 123

Query: 1010 NITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXEPAKTFTPGE 831
            +ITKKPNYRLY+I KLKSLRVLDF KVK KER+EAENLFASK        E AKTF PGE
Sbjct: 124  SITKKPNYRLYIIHKLKSLRVLDFKKVKSKERMEAENLFASKEVEEEAIRESAKTFIPGE 183

Query: 830  LQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLKI-P 654
            + NV E  +E Q P V APTPEQIIAIKAAIVNSQTLEEVARLEKAL SGQ+P DL I  
Sbjct: 184  VPNVTEDAEEQQNPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQIPTDLNIFD 243

Query: 653  GDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 519
             D +   V+ +DDKM  D  N    +  + + Q+ +D  A+MEQ+
Sbjct: 244  NDSELNTVQEKDDKMATDGDNKTDHEPSNLDEQKDSDS-ASMEQE 287


>ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotein A' [Vitis vinifera]
            gi|296085571|emb|CBI29303.3| unnamed protein product
            [Vitis vinifera]
          Length = 287

 Score =  326 bits (835), Expect = 1e-86
 Identities = 177/285 (62%), Positives = 206/285 (72%), Gaps = 1/285 (0%)
 Frame = -1

Query: 1370 LTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENFPFL 1191
            LTADLIWKSPHFFNA+ +RELDLRGNK++V+ENLGATEDQFDT+DLSDNEIVKLEN P+L
Sbjct: 4    LTADLIWKSPHFFNAIRERELDLRGNKVAVIENLGATEDQFDTIDLSDNEIVKLENLPYL 63

Query: 1190 ARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXXXXXVEIDPLASLTKLRFLTLLDN 1011
             RLG               IG+YLPK               EIDPL+S  KL+FL+LLDN
Sbjct: 64   NRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSFPKLQFLSLLDN 123

Query: 1010 NITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXEPAKTFTPGE 831
            NITKKPNYRLYVI +LKSLR+LDF KVK+KER+EAENLFASK        EP KTFTPGE
Sbjct: 124  NITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAENLFASKEVEEEAKQEPLKTFTPGE 183

Query: 830  LQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK-IP 654
            + N  E  +E Q P V  P+PE++IAIKAAIVNSQTLEEVARLEKALKSGQLPADLK + 
Sbjct: 184  MPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTLEEVARLEKALKSGQLPADLKSLV 243

Query: 653  GDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 519
             + +A  V  +DDKM     N + ++    E +QKND  A MEQ+
Sbjct: 244  ENTRADVVNEKDDKMVSSNPNTSRDEPKTVE-EQKNDDVAPMEQE 287


>gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium hirsutum]
          Length = 285

 Score =  325 bits (833), Expect = 2e-86
 Identities = 177/284 (62%), Positives = 207/284 (72%)
 Frame = -1

Query: 1370 LTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENFPFL 1191
            LTADLIWK PHFFNA+ +RELDLRGNKI+V+ENLGATEDQFDT+DLSDNEIVKL+NFP+L
Sbjct: 4    LTADLIWKCPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLDNFPYL 63

Query: 1190 ARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXXXXXVEIDPLASLTKLRFLTLLDN 1011
             RLG               IG++LP               VEIDPL+SL KL+FL+LLDN
Sbjct: 64   KRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLSSLPKLQFLSLLDN 123

Query: 1010 NITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXEPAKTFTPGE 831
            NITKKPNYRLYVI KLKSLRVLDF KVK KER+EAENLFASK        E  KT  P E
Sbjct: 124  NITKKPNYRLYVIHKLKSLRVLDFKKVKAKERLEAENLFASKEAEEEIKKESTKTVAPKE 183

Query: 830  LQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLKIPG 651
            + NV E  +E+Q P V APTPEQI+AIKAAIVNSQTLEEVARLEKAL++GQLPADLKIPG
Sbjct: 184  VPNVSEVAEEEQMPKVVAPTPEQILAIKAAIVNSQTLEEVARLEKALQTGQLPADLKIPG 243

Query: 650  DEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 519
            D+     +  D+K   D +N +  + D+ + + KN+ PA MEQ+
Sbjct: 244  DD-TNAAKGGDEKKVSDIQNESNVEPDNMD-EDKNEEPAPMEQE 285