BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006929
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase s...    94   2e-17
gb|AAA33037.1| ribulose 1,5-bisphosphate carboxylase/oxygenase s...    94   2e-17
sp|Q08184.1|RBS4_MESCR RecName: Full=Ribulose bisphosphate carbo...    94   2e-17
sp|Q08185.1|RBS5_MESCR RecName: Full=Ribulose bisphosphate carbo...    94   2e-17
sp|P16032.2|RBS1_MESCR RecName: Full=Ribulose bisphosphate carbo...    94   2e-17

>gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
           [Mesembryanthemum crystallinum]
          Length = 180

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = -3

Query: 473 YDGRYWTMWKLPMFGCTDASQVSAELEEAKKAYPNAFVRIIGFDN 339
           YDGRYWTMWKLPMFGCTD SQV AELEEAKKAYP AF+RIIGFDN
Sbjct: 117 YDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDN 161



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 40/110 (36%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = -1

Query: 544 PCLEFD-LNGFVFREYGNTPGYYEFMMADTGPCGSSPCSDALMHHXXXXXXXXXXXLTQM 368
           PCLEF+  +GFV+RE+GNTPGYY+             C+D                    
Sbjct: 95  PCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDP------------------- 135

Query: 367 RSSGSLDSTTXXXXXXXXXXXXXXXXXIIGFDNKRQVQCISFIAYKPENY 218
                  S                   IIGFDN RQVQCISFIAYKP +Y
Sbjct: 136 -------SQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 178


>gb|AAA33037.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
           [Mesembryanthemum crystallinum]
          Length = 183

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = -3

Query: 473 YDGRYWTMWKLPMFGCTDASQVSAELEEAKKAYPNAFVRIIGFDN 339
           YDGRYWTMWKLPMFGCTD SQV AELEEAKKAYP AF+RIIGFDN
Sbjct: 120 YDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDN 164



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 40/110 (36%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = -1

Query: 544 PCLEFD-LNGFVFREYGNTPGYYEFMMADTGPCGSSPCSDALMHHXXXXXXXXXXXLTQM 368
           PCLEF+  +GFV+RE+GNTPGYY+             C+D                    
Sbjct: 98  PCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDP------------------- 138

Query: 367 RSSGSLDSTTXXXXXXXXXXXXXXXXXIIGFDNKRQVQCISFIAYKPENY 218
                  S                   IIGFDN RQVQCISFIAYKP +Y
Sbjct: 139 -------SQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 181


>sp|Q08184.1|RBS4_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 4,
           chloroplastic; Short=RuBisCO small subunit 4; Flags:
           Precursor gi|167274|gb|AAA33038.1| ribulose
           1,5-bisphosphate carboxylase/oxygenase small subunit
           [Mesembryanthemum crystallinum] gi|436488|gb|AAA03696.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Mesembryanthemum crystallinum]
          Length = 183

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = -3

Query: 473 YDGRYWTMWKLPMFGCTDASQVSAELEEAKKAYPNAFVRIIGFDN 339
           YDGRYWTMWKLPMFGCTD SQV AELEEAKKAYP AF+RIIGFDN
Sbjct: 120 YDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDN 164



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 39/110 (35%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = -1

Query: 544 PCLEFD-LNGFVFREYGNTPGYYEFMMADTGPCGSSPCSDALMHHXXXXXXXXXXXLTQM 368
           PCLEF+  +GFV+RE+GNTPGYY+             C+D                    
Sbjct: 98  PCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDP------------------- 138

Query: 367 RSSGSLDSTTXXXXXXXXXXXXXXXXXIIGFDNKRQVQCISFIAYKPENY 218
                  S                   IIGFDN RQVQC+SFIAYKP +Y
Sbjct: 139 -------SQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPASY 181


>sp|Q08185.1|RBS5_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 5,
           chloroplastic; Short=RuBisCO small subunit 5; Flags:
           Precursor gi|436489|gb|AAA03697.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit, partial [Mesembryanthemum crystallinum]
          Length = 182

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = -3

Query: 473 YDGRYWTMWKLPMFGCTDASQVSAELEEAKKAYPNAFVRIIGFDN 339
           YDGRYWTMWKLPMFGCTD SQV AELEEAKKAYP AF+RIIGFDN
Sbjct: 119 YDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDN 163



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 39/110 (35%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = -1

Query: 544 PCLEFD-LNGFVFREYGNTPGYYEFMMADTGPCGSSPCSDALMHHXXXXXXXXXXXLTQM 368
           PCLEF+  +GFV+RE+GNTPGYY+             C+D                    
Sbjct: 97  PCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDP------------------- 137

Query: 367 RSSGSLDSTTXXXXXXXXXXXXXXXXXIIGFDNKRQVQCISFIAYKPENY 218
                  S                   IIGFDN RQVQC+SFIAYKP +Y
Sbjct: 138 -------SQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPASY 180


>sp|P16032.2|RBS1_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
           chloroplastic; Short=RuBisCO small subunit 1; Flags:
           Precursor gi|304442|gb|AAA03693.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Mesembryanthemum crystallinum]
           gi|228311|prf||1802403A RuBisCO:SUBUNIT=small
          Length = 182

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = -3

Query: 473 YDGRYWTMWKLPMFGCTDASQVSAELEEAKKAYPNAFVRIIGFDN 339
           YDGRYWTMWKLPMFGCTD SQV AELEEAKKAYP AF+RIIGFDN
Sbjct: 119 YDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDN 163



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 40/110 (36%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = -1

Query: 544 PCLEFD-LNGFVFREYGNTPGYYEFMMADTGPCGSSPCSDALMHHXXXXXXXXXXXLTQM 368
           PCLEF+  +GFV+RE+GNTPGYY+             C+D                    
Sbjct: 97  PCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDP------------------- 137

Query: 367 RSSGSLDSTTXXXXXXXXXXXXXXXXXIIGFDNKRQVQCISFIAYKPENY 218
                  S                   IIGFDN RQVQCISFIAYKP +Y
Sbjct: 138 -------SQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 180