BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006812
         (641 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001234016.1| GTP-binding nuclear protein Ran1 [Solanum ly...   136   4e-30
gb|AAQ54569.1| small Ras-like GTP-binding protein [Malus x domes...   135   8e-30
ref|XP_002866070.1| predicted protein [Arabidopsis lyrata subsp....   134   2e-29
emb|CBI21000.3| unnamed protein product [Vitis vinifera]              134   2e-29
ref|XP_002284967.1| PREDICTED: GTP-binding nuclear protein Ran-3...   134   2e-29

>ref|NP_001234016.1| GTP-binding nuclear protein Ran1 [Solanum lycopersicum]
           gi|585777|sp|P38546.1|RAN1_SOLLC RecName:
           Full=GTP-binding nuclear protein Ran1; AltName:
           Full=Ras-related nuclear protein 1
           gi|453561|gb|AAC37402.1| Ran protein/TC4 protein
           [Solanum lycopersicum] gi|77745509|gb|ABB02653.1|
           Ran/TC4-like protein [Solanum tuberosum]
           gi|82623375|gb|ABB87102.1| Ran protein/TC4 protein-like
           [Solanum tuberosum]
          Length = 221

 Score =  136 bits (342), Expect = 4e-30
 Identities = 70/90 (77%), Positives = 72/90 (80%)
 Frame = -1

Query: 641 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVH 462
           RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVH
Sbjct: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVH 191

Query: 461 IDXXXXXXXXXXXXXASHQPLPXXXDELFE 372
           ID             A++QPLP   DE FE
Sbjct: 192 IDLAAQALHEEELQQAANQPLPDDDDEAFE 221


>gb|AAQ54569.1| small Ras-like GTP-binding protein [Malus x domestica]
          Length = 183

 Score =  135 bits (339), Expect = 8e-30
 Identities = 70/90 (77%), Positives = 71/90 (78%)
 Frame = -1

Query: 641 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVH 462
           RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVH
Sbjct: 94  RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVH 153

Query: 461 IDXXXXXXXXXXXXXASHQPLPXXXDELFE 372
            D             A+ QPLP   DE FE
Sbjct: 154 FDMAAQQQHEAELASAAAQPLPDDDDEAFE 183


>ref|XP_002866070.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297311905|gb|EFH42329.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 193

 Score =  134 bits (336), Expect = 2e-29
 Identities = 69/90 (76%), Positives = 71/90 (78%)
 Frame = -1

Query: 641 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVH 462
           RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVH
Sbjct: 104 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDKNLHFVESPALAPPEVH 163

Query: 461 IDXXXXXXXXXXXXXASHQPLPXXXDELFE 372
           ID             A+ QPLP   D+ FE
Sbjct: 164 IDHAAQQKNEADLIAAASQPLPDDDDDAFE 193


>emb|CBI21000.3| unnamed protein product [Vitis vinifera]
          Length = 254

 Score =  134 bits (336), Expect = 2e-29
 Identities = 69/90 (76%), Positives = 71/90 (78%)
 Frame = -1

Query: 641 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVH 462
           RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVH
Sbjct: 165 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVH 224

Query: 461 IDXXXXXXXXXXXXXASHQPLPXXXDELFE 372
           ID             A+ QPLP   D+ FE
Sbjct: 225 IDLAAQQQHEAELAAAASQPLPDDDDDAFE 254


>ref|XP_002284967.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera]
           gi|225445410|ref|XP_002285018.1| PREDICTED: GTP-binding
           nuclear protein Ran-3-like [Vitis vinifera]
          Length = 221

 Score =  134 bits (336), Expect = 2e-29
 Identities = 69/90 (76%), Positives = 71/90 (78%)
 Frame = -1

Query: 641 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVH 462
           RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVH
Sbjct: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVH 191

Query: 461 IDXXXXXXXXXXXXXASHQPLPXXXDELFE 372
           ID             A+ QPLP   D+ FE
Sbjct: 192 IDLAAQQQHEAELAAAASQPLPDDDDDAFE 221