BLASTX nr result
ID: Coptis23_contig00006777
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00006777
(1309 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002531022.1| Transitional endoplasmic reticulum ATPase, p... 40 1e-10
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ... 49 5e-10
ref|XP_002517454.1| conserved hypothetical protein [Ricinus comm... 47 5e-09
ref|XP_003546182.1| PREDICTED: F-box protein CPR30-like [Glycine... 38 1e-08
ref|XP_003549554.1| PREDICTED: F-box protein CPR30-like [Glycine... 42 3e-08
>ref|XP_002531022.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
communis] gi|223529397|gb|EEF31360.1| Transitional
endoplasmic reticulum ATPase, putative [Ricinus communis]
Length = 1029
Score = 40.0 bits (92), Expect(4) = 1e-10
Identities = 34/97 (35%), Positives = 46/97 (47%)
Frame = -3
Query: 581 QIFTLGSTSWRRKVGVVPKVLPRDSGILSAPIVSGSLHWITTSDNDESDPLKEGRSLLIV 402
++F+L + SWR P LP L V G+LHW + E D LI
Sbjct: 797 KVFSLRTNSWRTIQDSSPSYLPYP---LPGIFVHGALHW-SARHGIEPD------YSLIA 846
Query: 401 SFHLGGEEFRFVPTPTLQLLKNSCYPYTLGVLEGHLS 291
SF L E+F+ VP P + ++ +TLGVL G LS
Sbjct: 847 SFDLAAEKFKEVPEPKGEDRQSF---FTLGVLRGCLS 880
Score = 33.1 bits (74), Expect(4) = 1e-10
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = -1
Query: 313 GCLKVISQCSSEPYIQVWVMNKYNVKESWVNQFCIELDSLRGRGLGMPYSYVKLLQVC-- 140
GCL + +++MNKYNV +SW +F S +LL +C
Sbjct: 877 GCLSYVKTYVEGNISAIYMMNKYNVMDSWTKEFRFASPSATALS-------PELLPLCYT 929
Query: 139 KNGQHLFVSDSKNLVSYNITSRKC*LVEI 53
K+G ++ SK L+ + S+ ++EI
Sbjct: 930 KDGVIAMMNSSKELLLCSPKSQMLNVMEI 958
Score = 29.6 bits (65), Expect(4) = 1e-10
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = -1
Query: 916 DTEFIRQTFYNVPQT--LGACNGFVCISEIVVVDYTWFPRNPIYVFNPITKQTGELPKFT 743
D EF + P +G+CNG +CI+ +D + F +V NP TK+ LP
Sbjct: 703 DLEFFNSFPFYGPDVNIVGSCNGLICIA----LDLSTF-----FVLNPGTKECRALPD-- 751
Query: 742 VPKRNVPGWVDEV*TVGKFLSGFGYHGS 659
PG + G GFGY S
Sbjct: 752 ------PGSYPD----GVAYYGFGYDAS 769
Score = 29.3 bits (64), Expect(4) = 1e-10
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -2
Query: 1131 LSRLPCKTIAQCKCV-----SKLWCTILSDSTFPKLQLTHLLQ 1018
LSRLP K++ KCV SK W +++ D F + L +L+
Sbjct: 634 LSRLPVKSLFWFKCVSKHWLSKHWLSLIGDRGFAEKHLHRVLE 676
>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 389
Score = 48.5 bits (114), Expect(2) = 5e-10
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Frame = -3
Query: 596 FNNEAQIFTLGSTSWRRKVGVVPKVL-PRDSGILSAPIVSGSLHWITTSDNDESDPLKEG 420
F +E ++F+L SWRR + VL P ++GI + +G+LHW+ + D D +
Sbjct: 169 FESEVKVFSLRKNSWRRIADMPYCVLYPGENGIYA----NGALHWLVSQDPDST------ 218
Query: 419 RSLLIVSFHLGGEEFRFVPTPTLQLLKNSCYPYTLGVLEGHLSML 285
+ IV+ LG E++ VP P + + +C +GVL+G LS+L
Sbjct: 219 VADTIVALDLGVEDYHVVPKP--EFVDMNC-NMGVGVLQGCLSLL 260
Score = 42.7 bits (99), Expect(2) = 5e-10
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = -1
Query: 313 GCLKVISQCSSEPYIQVWVMNKYNVKESWVNQFCIELDSLRGRGLGMPYSYVKLLQVCKN 134
GCL +++ SE + VWVM +Y VKESW F + R +G+ S +K L K+
Sbjct: 255 GCLSLLAYARSER-VDVWVMEEYMVKESWSKLFSV----ARLEVIGILRS-LKPLAYSKS 308
Query: 133 GQHLFVS-DSKNLVSYNITSRKC*LVEIEGV 44
G + + D+ NL Y++ ++ V I+GV
Sbjct: 309 GNEVLIEHDNVNLFWYDLKRKEVVNVWIQGV 339
>ref|XP_002517454.1| conserved hypothetical protein [Ricinus communis]
gi|223543465|gb|EEF44996.1| conserved hypothetical
protein [Ricinus communis]
Length = 401
Score = 47.4 bits (111), Expect(3) = 5e-09
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = -1
Query: 931 PFKTTDTEFIRQTFYNVPQTLGACNGFVCISEIVVVDYTWFPRNPIYVFNPITKQTGELP 752
PF++ +EF + +G+CNG +C+ Y +F +P+Y++NP T + ELP
Sbjct: 103 PFESVLSEF---------EVVGSCNGLICL-------YDYFSDDPLYIYNPFTIECRELP 146
Query: 751 KFTVPKRNVPGWVDEV*TVGKFLSGFGYHGSV--FKLVLVIF 632
+ +V + + + GFG+H + +K++ +++
Sbjct: 147 RVEASPHSV---------ICRVVFGFGFHPKMEEYKVIKIVY 179
Score = 35.0 bits (79), Expect(3) = 5e-09
Identities = 32/102 (31%), Positives = 46/102 (45%)
Frame = -3
Query: 587 EAQIFTLGSTSWRRKVGVVPKVLPRDSGILSAPIVSGSLHWITTSDNDESDPLKEGRSLL 408
EA + T + +WR + K+ +G S +V+ LHW+T E +E
Sbjct: 193 EAFVLTANTPTWRN----IGKIGYDLNGPTSEALVNEKLHWLTFCLVHEEVKYRE----- 243
Query: 407 IVSFHLGGEEFRFVPTPTLQLLKNSCYPYTLGVLEGHLSMLI 282
IVSF L E+F+ VP P L Y L L G LS ++
Sbjct: 244 IVSFDLETEQFQDVPRPGCGGLDQ--INYHLVTLRGCLSAIV 283
Score = 25.0 bits (53), Expect(3) = 5e-09
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 1131 LSRLPCKTIAQCKCVSKLWCTILSDSTFPKLQL 1033
LSR P ++ +CK VS+ W T + + + L
Sbjct: 31 LSRQPIVSLLECKPVSRHWYTSVRNPLLANMHL 63
>ref|XP_003546182.1| PREDICTED: F-box protein CPR30-like [Glycine max]
Length = 394
Score = 37.7 bits (86), Expect(3) = 1e-08
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = -1
Query: 271 IQVWVMNKYNVKESWVNQFCIELDSLRGRGLGMPYSYVKLLQVCKNGQHLFVS-DSKNLV 95
I VWVM +YN ++SW F +E +S R L V+ L +G + + D K L
Sbjct: 272 IDVWVMREYNRRDSWCKVFTLE-ESREMRSL----KCVRPLGYSSDGNKVLLEHDRKRLF 326
Query: 94 SYNITSRKC*LVEIEGV 44
Y++ ++ LV+I+G+
Sbjct: 327 WYDLEKKEVALVKIQGL 343
Score = 34.7 bits (78), Expect(3) = 1e-08
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = -1
Query: 871 LGACNGFVCISEIVVVDYTWFPRNPIYVFNPITKQTGELPKFTVPKRNVPGWVDEV*TVG 692
LG+CNG +CIS + + I +NP +Q LP VP+R P V
Sbjct: 94 LGSCNGLLCISNVA---------DDIAFWNPSLRQHRILPYLPVPRRRHPDTTLFAARVC 144
Query: 691 KFLSGFGYHGSVFKLVLVIFAV 626
F GF + +KLV + + V
Sbjct: 145 GF--GFDHKTRDYKLVRISYFV 164
Score = 33.9 bits (76), Expect(3) = 1e-08
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = -3
Query: 596 FNNEAQIFTLGSTSWRRKVGVVPKVL--PRDSGILSAPIVSGSLHWITTSDNDESDPLKE 423
F+++ +++TL + +W+ + +P L R G+ V SLHW+ T + P
Sbjct: 171 FDSQVKLYTLRANAWKT-LPSLPYALCCARTMGVF----VGNSLHWVVTRKLEPDQP--- 222
Query: 422 GRSLLIVSFHLGGEEFRFVPTPTLQLLKNSCYPYTLGVLEGHLSMLI 282
LI++F L + FR +P P + + L +L G L M +
Sbjct: 223 ---DLIIAFDLTHDIFRELPLPDTGGVDGG-FEIDLALLGGSLCMTV 265
>ref|XP_003549554.1| PREDICTED: F-box protein CPR30-like [Glycine max]
Length = 382
Score = 41.6 bits (96), Expect(4) = 3e-08
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -3
Query: 596 FNNEAQIFTLGSTSWRRKVGVVPKVL--PRDSGILSAPIVSGSLHWITTSDNDESDPLKE 423
F+++ Q++TL S SW+ + +P L R G+ VSGSLHW+ T +P
Sbjct: 164 FDSQVQLYTLKSDSWKN-LPSMPYALCCARTMGVF----VSGSLHWLVTRKLQPDEP--- 215
Query: 422 GRSLLIVSFHLGGEEFRFVPTP 357
LIV+F L E F VP P
Sbjct: 216 ---DLIVAFDLTSETFCEVPLP 234
Score = 29.6 bits (65), Expect(4) = 3e-08
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -1
Query: 313 GCLKVISQCSSEPYIQVWVMNKYNVKESWVNQFCIELDSLRGRGLGMPYSYVKLLQVCKN 134
GCL V+ + VWVM Y ++SW F + + G G YV+ L +
Sbjct: 250 GCLCVVEHRGTG--FHVWVMRVYGSRDSWEKLFSLTENHHHEMGSG-KLKYVRPLALDDG 306
Query: 133 GQHLFVSDSKNLVSYNI 83
+ LF + L Y++
Sbjct: 307 DRVLFEHNRSKLCWYDL 323
Score = 26.9 bits (58), Expect(4) = 3e-08
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 1131 LSRLPCKTIAQCKCVSKLWCTILSDSTFPKLQLTHLLQIHPDIYLSY 991
LSRLP K++ + + K W +I+ F L HL + H + L +
Sbjct: 13 LSRLPVKSVIRLRSTCKWWRSIIDSRHF---ILFHLNKSHTSLILRH 56
Score = 25.0 bits (53), Expect(4) = 3e-08
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = -1
Query: 892 FYNVPQTLGACNGFVCISEIVVVDYTWFPRNPIYVFNPITKQTGELP--KFTVPKRNVPG 719
+ N + LG+ NG +CIS + + I ++NP ++ LP +F P+ ++
Sbjct: 83 YSNSIKVLGSSNGLLCISNVA---------DDIALWNPFLRKHRILPSDRFHRPESSL-- 131
Query: 718 WVDEV*TVGKFLSGFGYH--GSVFKLVLVIFAV 626
+ GFG+H + +KL+ + + V
Sbjct: 132 -------FAARVYGFGHHPPSNDYKLLSITYFV 157