BLASTX nr result

ID: Coptis23_contig00006753 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006753
         (382 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF78446.1|AC018748_25 Contains similarity to receptor-like s...    78   7e-13
ref|NP_175748.1| Leucine-rich repeat transmembrane protein kinas...    78   7e-13
sp|C0LGG8.1|Y5343_ARATH RecName: Full=Probable LRR receptor-like...    78   7e-13
gb|AAN60252.1| unknown [Arabidopsis thaliana]                          78   7e-13
ref|XP_002891752.1| leucine-rich repeat family protein [Arabidop...    77   1e-12

>gb|AAF78446.1|AC018748_25 Contains similarity to receptor-like serine/threonine kinase from
           Arabidopsis thaliana gb|AF024648 and contains multiple
           leucine rich PF|00560 repeats and protein kinase
           PF|00069 domain. ESTs gb|T04455, gb|N38129 come from
           this gene [Arabidopsis thaliana]
          Length = 942

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 40/98 (40%), Positives = 63/98 (64%)
 Frame = -1

Query: 295 LNFLAISRRAVYTLLLLFIVLTVSGEFRSDAQAVIPTDELETLQRIFTKLGIRQWNVNQN 116
           + F+  + + VY LLL+F+ L     F S+AQ ++P DE++TL+ IF KL  +  N+ + 
Sbjct: 1   MGFIFSTEKVVYVLLLIFVCLE---NFGSNAQ-LLPEDEVQTLRTIFRKLQNQTVNIERT 56

Query: 115 SCRTGQGFNIATPGSSSDASSNVTCDCNFNASTICHVT 2
           SC + Q +N     +S+  +SN+TCDC FNAS++C VT
Sbjct: 57  SC-SDQNWNFVVESASNSPTSNITCDCTFNASSVCRVT 93


>ref|NP_175748.1| Leucine-rich repeat transmembrane protein kinase [Arabidopsis
           thaliana] gi|332194818|gb|AEE32939.1| Leucine-rich
           repeat transmembrane protein kinase [Arabidopsis
           thaliana]
          Length = 1030

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 40/98 (40%), Positives = 63/98 (64%)
 Frame = -1

Query: 295 LNFLAISRRAVYTLLLLFIVLTVSGEFRSDAQAVIPTDELETLQRIFTKLGIRQWNVNQN 116
           + F+  + + VY LLL+F+ L     F S+AQ ++P DE++TL+ IF KL  +  N+ + 
Sbjct: 1   MGFIFSTEKVVYVLLLIFVCLE---NFGSNAQ-LLPEDEVQTLRTIFRKLQNQTVNIERT 56

Query: 115 SCRTGQGFNIATPGSSSDASSNVTCDCNFNASTICHVT 2
           SC + Q +N     +S+  +SN+TCDC FNAS++C VT
Sbjct: 57  SC-SDQNWNFVVESASNSPTSNITCDCTFNASSVCRVT 93


>sp|C0LGG8.1|Y5343_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein
           kinase At1g53430; Flags: Precursor
           gi|224589438|gb|ACN59253.1| leucine-rich repeat
           receptor-like protein kinase [Arabidopsis thaliana]
          Length = 1038

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 40/98 (40%), Positives = 63/98 (64%)
 Frame = -1

Query: 295 LNFLAISRRAVYTLLLLFIVLTVSGEFRSDAQAVIPTDELETLQRIFTKLGIRQWNVNQN 116
           + F+  + + VY LLL+F+ L     F S+AQ ++P DE++TL+ IF KL  +  N+ + 
Sbjct: 1   MGFIFSTEKVVYVLLLIFVCLE---NFGSNAQ-LLPEDEVQTLRTIFRKLQNQTVNIERT 56

Query: 115 SCRTGQGFNIATPGSSSDASSNVTCDCNFNASTICHVT 2
           SC + Q +N     +S+  +SN+TCDC FNAS++C VT
Sbjct: 57  SC-SDQNWNFVVESASNSPTSNITCDCTFNASSVCRVT 93


>gb|AAN60252.1| unknown [Arabidopsis thaliana]
          Length = 182

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 40/98 (40%), Positives = 63/98 (64%)
 Frame = -1

Query: 295 LNFLAISRRAVYTLLLLFIVLTVSGEFRSDAQAVIPTDELETLQRIFTKLGIRQWNVNQN 116
           + F+  + + VY LLL+F+ L     F S+AQ ++P DE++TL+ IF KL  +  N+ + 
Sbjct: 1   MGFIFSTEKVVYVLLLIFVCLE---NFGSNAQ-LLPEDEVQTLRTIFRKLQNQTVNIERT 56

Query: 115 SCRTGQGFNIATPGSSSDASSNVTCDCNFNASTICHVT 2
           SC + Q +N     +S+  +SN+TCDC FNAS++C VT
Sbjct: 57  SC-SDQNWNFVVESASNSPTSNITCDCTFNASSVCRVT 93


>ref|XP_002891752.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297337594|gb|EFH68011.1| leucine-rich repeat
           family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1037

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 41/98 (41%), Positives = 62/98 (63%)
 Frame = -1

Query: 295 LNFLAISRRAVYTLLLLFIVLTVSGEFRSDAQAVIPTDELETLQRIFTKLGIRQWNVNQN 116
           + F+  ++  VY LLL+FI L     F S+AQ ++P DE++TL+ IF KL  +  N+ + 
Sbjct: 1   MGFIFSTKEVVYVLLLIFICLE---NFGSNAQ-LLPDDEVQTLRTIFRKLQNQTVNIERT 56

Query: 115 SCRTGQGFNIATPGSSSDASSNVTCDCNFNASTICHVT 2
           SC T + +N     S +  +SN+TCDC FNAS++C VT
Sbjct: 57  SC-TDENWNFVAGSSPNAVTSNITCDCTFNASSVCRVT 93


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