BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006682
         (897 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...    86   9e-15
ref|NP_176930.2| DNA polymerase alpha 2 [Arabidopsis thaliana] g...    80   8e-13
dbj|BAC43176.1| putative DNA polymerase alpha subunit [Arabidops...    80   8e-13
ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabi...    79   2e-12
gb|AEL99206.1| DNA polymerase alpha subunit B family protein, pa...    77   4e-12

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score = 86.3 bits (212), Expect = 9e-15
 Identities = 43/60 (71%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = -3

Query: 382 LQDYAECMGYATRVFLVPSLRDAYHDFVFPQPAFDIH-SDLKNQMTRLTNLGLFDENKVK 206
           LQDY E MG A RV LVPS+RDA HDFVFPQPAF IH  DLK+Q+T LTN G+FD N+VK
Sbjct: 428 LQDYVEYMGSAARVILVPSIRDANHDFVFPQPAFSIHPPDLKHQITSLTNPGMFDANEVK 487


>ref|NP_176930.2| DNA polymerase alpha 2 [Arabidopsis thaliana]
           gi|332196552|gb|AEE34673.1| DNA polymerase alpha 2
           [Arabidopsis thaliana]
          Length = 620

 Score = 79.7 bits (195), Expect = 8e-13
 Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
 Frame = -3

Query: 382 LQDYAECMGYATRVFLVPSLRDAYHDFVFPQPAFDIH-SDLKNQMTRLTNLGLFDENKVK 206
           LQDY E MG   RV LVPS+RDA HDF+FPQP FDIH  DL++QMT L+N G F+ N+VK
Sbjct: 429 LQDYVEFMGSEVRVVLVPSIRDANHDFIFPQPPFDIHIPDLEHQMTSLSNPGTFEANQVK 488


>dbj|BAC43176.1| putative DNA polymerase alpha subunit [Arabidopsis thaliana]
           gi|29028994|gb|AAO64876.1| At1g67630 [Arabidopsis
           thaliana]
          Length = 620

 Score = 79.7 bits (195), Expect = 8e-13
 Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
 Frame = -3

Query: 382 LQDYAECMGYATRVFLVPSLRDAYHDFVFPQPAFDIH-SDLKNQMTRLTNLGLFDENKVK 206
           LQDY E MG   RV LVPS+RDA HDF+FPQP FDIH  DL++QMT L+N G F+ N+VK
Sbjct: 429 LQDYVEFMGSEVRVVLVPSIRDANHDFIFPQPPFDIHIPDLEHQMTSLSNPGTFEANQVK 488


>ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp.
           lyrata] gi|297334453|gb|EFH64871.1| DNA polymerase alpha
           subunit B family [Arabidopsis lyrata subsp. lyrata]
          Length = 619

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = -3

Query: 448 VDLCLFDTSMATTLRKLLKGLMLQDYAECMGYATRVFLVPSLRDAYHDFVFPQPAFDIH- 272
           VD    +      LRKL      +DY E MG   RV LVPS+RDA HDF+FPQP FDIH 
Sbjct: 412 VDATFSEIFQVEVLRKL------RDYVEFMGSEVRVVLVPSIRDANHDFIFPQPPFDIHI 465

Query: 271 SDLKNQMTRLTNLGLFDENKVK 206
            DL++QMT L+N G F+ N+VK
Sbjct: 466 PDLEHQMTSLSNPGTFEANQVK 487


>gb|AEL99206.1| DNA polymerase alpha subunit B family protein, partial [Silene
           latifolia]
          Length = 140

 Score = 77.4 bits (189), Expect = 4e-12
 Identities = 38/59 (64%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
 Frame = -3

Query: 382 LQDYAECMGYATRVFLVPSLRDAYHDFVFPQPAFDIH-SDLKNQMTRLTNLGLFDENKV 209
           L D+ E MG +TRV LVPS+RDA HDFVFPQP FDIH  +LK+Q++ LTN G+FD +KV
Sbjct: 20  LGDHVEYMGSSTRVLLVPSIRDANHDFVFPQPPFDIHPPELKDQISSLTNPGIFDADKV 78