BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006661
         (1552 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75706.1| hypothetical protein VITISV_031419 [Vitis vinifera]   372   e-100
emb|CBI28917.3| unnamed protein product [Vitis vinifera]              367   4e-99
ref|XP_002517974.1| conserved hypothetical protein [Ricinus comm...   346   1e-92
ref|XP_002329402.1| predicted protein [Populus trichocarpa] gi|2...   319   1e-84
ref|XP_003636623.1| H/ACA ribonucleoprotein complex non-core sub...   299   2e-78

>emb|CAN75706.1| hypothetical protein VITISV_031419 [Vitis vinifera]
          Length = 641

 Score =  372 bits (954), Expect = e-100
 Identities = 207/445 (46%), Positives = 268/445 (60%), Gaps = 14/445 (3%)
 Frame = -1

Query: 1474 DEEEILAGSDEDEP------ALKGPIKSKNEIQILPPVPPVDATLKPHHKTLPVGVIMSM 1313
            +EEE++AGSD D           G IKSKNEI+ LPPVPP+D TL+PHH+TLPVGV+ S+
Sbjct: 191  EEEEMIAGSDYDGEDDSCGNVKGGAIKSKNEIEALPPVPPLDVTLQPHHQTLPVGVVSSI 250

Query: 1312 MDTKVVVEGLEKHSPLNEGSILWITETRTPLGLVDEVFGPVKNPFYIVRYNSEQEVPAGL 1133
            +  KV+VEG EKH PL EGSILWITE+R+PLGL+DE+FGPVKNP+Y+VRYNS+ EVPAG+
Sbjct: 251  IGAKVIVEGAEKHKPLTEGSILWITESRSPLGLIDEIFGPVKNPYYVVRYNSDSEVPAGI 310

Query: 1132 SEGTSVSFVTDFAYHVLNDKNLYKKGYDASGENDEELGDEVEFSDDEKEAEYRKAQRMAS 953
            +EGT +SFV  FA H+LN++NLYKKGYDASGENDEE+ D VEFSDDE+EAE+++  +M  
Sbjct: 311  NEGTFISFVPQFANHILNERNLYKKGYDASGENDEEVSD-VEFSDDEEEAEHKRTLKMIK 369

Query: 952  KGSSDRKRGNQEFVARKKVQHKDRSWKNGQPPAQPLGGPSNHTNMANQFC------TPPV 791
            +G++D+K GN++   RKKV+++D +WKNGQ           H+  A+QF       TP  
Sbjct: 370  RGTNDQKPGNKK-NKRKKVKNRDGAWKNGQ-----------HSTAADQFFDDKHSKTPDH 417

Query: 790  ETXXXXXXXXXXXXXXXXXXXXXXXXXXALQVPHANYCTPNLMPANGVWMNG-MPGQQQQ 614
            +                             Q+       P   P +G+W +G MP QQQQ
Sbjct: 418  DQHHTPQVAASSPFGVGQFFAGGGLVPPYPQMAQVAGFIP---PPSGIWASGIMPCQQQQ 474

Query: 613  QIIFHNGFPMNGMAIQQPGHYQQSPQMLNGFPSGMPFQQQFDPNQRMMQNMALPYGQPNF 434
              +F N FP + +      H+    QM    P+GM FQQQFDP      N  L  GQ NF
Sbjct: 475  NTVFPNSFPRDTLPWPPQNHHPHPFQM--PMPNGMLFQQQFDPGHAAFPNAVLSSGQANF 532

Query: 433  SSGPC-ASWPGNLGQPGLNQAQFGFGLPGPHPHTSFNAGDSLGFSNGSFEQQSNGMPPPS 257
               P    WPG   Q GLNQA FG GL G H     +AG+    S+G    QS  + PP+
Sbjct: 533  FMRPTYPPWPGLGAQSGLNQAAFGMGLQGQHARPIISAGEQGALSSGLPMGQSCDVQPPA 592

Query: 256  TMQGNFSTPNQNSPRATSTRGRKPY 182
              QG      Q + RA+  RG+KP+
Sbjct: 593  VTQGKIQASQQFNQRASFGRGKKPF 617


>emb|CBI28917.3| unnamed protein product [Vitis vinifera]
          Length = 444

 Score =  367 bits (943), Expect = 4e-99
 Identities = 206/441 (46%), Positives = 265/441 (60%), Gaps = 14/441 (3%)
 Frame = -1

Query: 1462 ILAGSDEDEP------ALKGPIKSKNEIQILPPVPPVDATLKPHHKTLPVGVIMSMMDTK 1301
            ++AGSD D           G IKSKNEI+ LPPVPP+D TL+PHH+TLPVGV+ S++  K
Sbjct: 1    MIAGSDYDGEDDSCGNVKGGAIKSKNEIEALPPVPPLDVTLQPHHQTLPVGVVSSIIGAK 60

Query: 1300 VVVEGLEKHSPLNEGSILWITETRTPLGLVDEVFGPVKNPFYIVRYNSEQEVPAGLSEGT 1121
            V+VEG EKH PL EGSILWITE+R+PLGLVDE+FGPVKNP+Y+VRYNS+ EVPAG++EGT
Sbjct: 61   VIVEGAEKHKPLTEGSILWITESRSPLGLVDEIFGPVKNPYYVVRYNSDSEVPAGINEGT 120

Query: 1120 SVSFVTDFAYHVLNDKNLYKKGYDASGENDEELGDEVEFSDDEKEAEYRKAQRMASKGSS 941
             +SFV +FA H+LN++NLYKKGYDASGENDEE+ D VEFSDDE+EAE++K  +M  +G++
Sbjct: 121  FISFVPEFANHILNERNLYKKGYDASGENDEEVSD-VEFSDDEEEAEHKKTLKMIKRGTN 179

Query: 940  DRKRGNQEFVARKKVQHKDRSWKNGQPPAQPLGGPSNHTNMANQFC------TPPVETXX 779
            D+K GN++   RKKV+++D +WKNGQ           H+  A+QF       TP  +   
Sbjct: 180  DQKPGNKK-NKRKKVKNRDGAWKNGQ-----------HSTAADQFFDDKHSKTPDHDQHH 227

Query: 778  XXXXXXXXXXXXXXXXXXXXXXXXALQVPHANYCTPNLMPANGVWMNG-MPGQQQQQIIF 602
                                      Q+       P   P +G+W +G MP QQQQ  +F
Sbjct: 228  TPQVAASSPFGVGQFFAGGGLVPPYPQMAQVAGFIP---PPSGIWASGIMPCQQQQNTVF 284

Query: 601  HNGFPMNGMAIQQPGHYQQSPQMLNGFPSGMPFQQQFDPNQRMMQNMALPYGQPNFSSGP 422
             N FP + +      H+    QM    P+GM FQQQFDP      N  L  GQ NF   P
Sbjct: 285  PNSFPTDTLPWPPQNHHPHPFQM--PMPNGMLFQQQFDPGHAAFPNAVLSSGQANFFMRP 342

Query: 421  C-ASWPGNLGQPGLNQAQFGFGLPGPHPHTSFNAGDSLGFSNGSFEQQSNGMPPPSTMQG 245
                WPG   Q GLNQA FG GL G H     +AG+    S+G    QS  + PP+  QG
Sbjct: 343  TYPPWPGLGAQSGLNQAAFGMGLQGQHARPIISAGEQGALSSGLPMGQSCDVQPPAVTQG 402

Query: 244  NFSTPNQNSPRATSTRGRKPY 182
                  Q + RA+  RG+KP+
Sbjct: 403  KIQASQQFNQRASFGRGKKPF 423


>ref|XP_002517974.1| conserved hypothetical protein [Ricinus communis]
            gi|223542956|gb|EEF44492.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 786

 Score =  346 bits (887), Expect = 1e-92
 Identities = 186/431 (43%), Positives = 250/431 (58%)
 Frame = -1

Query: 1486 IKYFDEEEILAGSDEDEPALKGPIKSKNEIQILPPVPPVDATLKPHHKTLPVGVIMSMMD 1307
            +++ D EE     +E    +KGPI+S+NE++ LPPVPPVD TL+PHH+ LPVGV++S+++
Sbjct: 358  VEFDDIEE----EEEGTGLMKGPIRSQNELKFLPPVPPVDVTLQPHHQVLPVGVVLSIIN 413

Query: 1306 TKVVVEGLEKHSPLNEGSILWITETRTPLGLVDEVFGPVKNPFYIVRYNSEQEVPAGLSE 1127
             +V+VEG+EKH+PLNEGSILWITE R+PLGLVDE+FGPV+NP+Y+VRYNSE EVP+G+S+
Sbjct: 414  AQVIVEGVEKHNPLNEGSILWITEKRSPLGLVDEIFGPVQNPYYVVRYNSESEVPSGISQ 473

Query: 1126 GTSVSFVTDFAYHVLNDKNLYKKGYDASGENDEELGDEVEFSDDEKEAEYRKAQRMASKG 947
            GT +SFV +FA HVLN+KNLYKKGYDASGENDEEL DE EFSDDEKEAEY + ++M+ +G
Sbjct: 474  GTRISFVAEFANHVLNEKNLYKKGYDASGENDEELSDEAEFSDDEKEAEYMRMKKMSKRG 533

Query: 946  SSDRKRGNQEFVARKKVQHKDRSWKNGQPPAQPLGGPSNHTNMANQFCTPPVETXXXXXX 767
             + +  GN     +K  + KD++    +    PLG    H +M      PP +       
Sbjct: 534  INGQTVGN-----KKNSRTKDKNRNGNRKNVGPLG---QHASMCGGQLPPPNQNQQNTSS 585

Query: 766  XXXXXXXXXXXXXXXXXXXXALQVPHANYCTPNLMPANGVWMNGMPGQQQQQIIFHNGFP 587
                                    P          P+NG W++G+  QQ Q  +   GFP
Sbjct: 586  AVASMNNYSSSSSFTGGASFFQPFPPMAQSAGLFQPSNGAWISGLASQQPQNAVIPGGFP 645

Query: 586  MNGMAIQQPGHYQQSPQMLNGFPSGMPFQQQFDPNQRMMQNMALPYGQPNFSSGPCASWP 407
             N M+      +    +M     +GMPFQQQF P+Q  + N   P GQ +F +GP + WP
Sbjct: 646  ANNMSWAAQNQFHPPSRM--PITNGMPFQQQFIPSQGSLSNGVPPGGQMSFFAGP-SPWP 702

Query: 406  GNLGQPGLNQAQFGFGLPGPHPHTSFNAGDSLGFSNGSFEQQSNGMPPPSTMQGNFSTPN 227
              +GQ   NQA F  G          N GD           Q NG+   + + GN   P 
Sbjct: 703  AVIGQNCFNQAPFEMGFQVQPTQPIMNVGD-----------QGNGLGVSAVIPGNIQAPQ 751

Query: 226  QNSPRATSTRG 194
            Q +  A S RG
Sbjct: 752  QFNSGAPSGRG 762


>ref|XP_002329402.1| predicted protein [Populus trichocarpa] gi|222870452|gb|EEF07583.1|
            predicted protein [Populus trichocarpa]
          Length = 685

 Score =  319 bits (818), Expect = 1e-84
 Identities = 186/430 (43%), Positives = 243/430 (56%), Gaps = 8/430 (1%)
 Frame = -1

Query: 1447 DEDEPALK--GPIKSKNEIQILPPVPPVDATLKPHHKTLPVGVIMSMMDTKVVVEGLEKH 1274
            DEDE A+    PI+SKNE++ LPPVPPV A+L+PHH+   VG ++S + ++V+VEG+EKH
Sbjct: 274  DEDEDAVNEGDPIRSKNELKFLPPVPPVVASLEPHHQMQAVGAVLSAIGSQVIVEGVEKH 333

Query: 1273 SPLNEGSILWITETRTPLGLVDEVFGPVKNPFYIVRYNSEQEVPAGLSEGTSVSFVTDFA 1094
            +PLNEGSILWITE R+PLGLVDE+FGPVKNP+Y+VRYNSE EVP G+  GT +SFV +FA
Sbjct: 334  NPLNEGSILWITEKRSPLGLVDEIFGPVKNPYYVVRYNSESEVPGGIHNGTVISFVPEFA 393

Query: 1093 YHVLNDKNLYKKGYDASGENDEELGDEVEFSDDEKEAEYRKAQRMASKGSSDRKRGNQEF 914
             HVLNDKNLYKKGYDASGE DEEL  E EFSDD++EAEY++  +M+ +G      G ++ 
Sbjct: 394  NHVLNDKNLYKKGYDASGEFDEELTKEAEFSDDDEEAEYKRMLKMSKRGIDCEMVGKKK- 452

Query: 913  VARKKVQHKDRSWKNGQPPAQPL-GGPSNHTNMANQFCTPPVETXXXXXXXXXXXXXXXX 737
              R+KV+++   WKN +P  + +  G    +   N F    V T                
Sbjct: 453  NNRRKVKNRGGGWKNNKPSGEQIPTGVDQLSPDQNLFNESSVGT---------------- 496

Query: 736  XXXXXXXXXXALQVPHANYCTPNLMPANGVWMNGMPGQQQQQIIFHNGFPMNGM---AIQ 566
                         VP     T  +   NG W+N  P  Q + +    GFP N M   A  
Sbjct: 497  ---------AFAPVPQ----TTGVFTPNGGWVNEAPSHQPETLAIPGGFPANNMPWAARS 543

Query: 565  QPGHYQQSPQMLNGFPSGMPFQQQFDPNQRMMQNMALPYGQPNFSSGPC--ASWPGNLGQ 392
            Q  H  Q P+ +     GMP QQQF+P +  + N   P G PNF +GP     WP   GQ
Sbjct: 544  QLQHPYQIPRAI-----GMPIQQQFNPCKGPLPNAFFPGGHPNFFAGPTYPPPWPAVGGQ 598

Query: 391  PGLNQAQFGFGLPGPHPHTSFNAGDSLGFSNGSFEQQSNGMPPPSTMQGNFSTPNQNSPR 212
               NQA FG G        + N  +    S G   +Q+     P+   GN   P Q +  
Sbjct: 599  NYFNQAAFGTGFQVQPNPQAMNTIEQGMMSRGLPLEQNCSFQSPAIPPGNIKAPQQFNTG 658

Query: 211  ATSTRGRKPY 182
            A+S+ GRKPY
Sbjct: 659  ASSSHGRKPY 668


>ref|XP_003636623.1| H/ACA ribonucleoprotein complex non-core subunit NAF1 [Medicago
            truncatula] gi|355502558|gb|AES83761.1| H/ACA
            ribonucleoprotein complex non-core subunit NAF1 [Medicago
            truncatula]
          Length = 567

 Score =  299 bits (765), Expect = 2e-78
 Identities = 190/446 (42%), Positives = 244/446 (54%), Gaps = 15/446 (3%)
 Frame = -1

Query: 1474 DEEEILAGS------DEDEPALKGPIKSKNEIQILPPVPPVDATLKPHHKTLPVGVIMSM 1313
            D+E++++ S      D+DE  + GPIKSKNEIQ LPPVPPVD  L PHHK LPVGV+MS 
Sbjct: 151  DDEKMVSWSAADGDLDDDEDVVVGPIKSKNEIQNLPPVPPVDVCLAPHHKMLPVGVVMST 210

Query: 1312 MDTKVVVEGLEKHSPLNEGSILWITETRTPLGLVDEVFGPVKNPFYIVRYNSEQEVPAGL 1133
            +  +V+VEG+EKH PLNEGS+LW+TE+R PLGLVDE+FGPVKNP+Y+VRYNSE +VPAG+
Sbjct: 211  LGAQVIVEGVEKHEPLNEGSVLWLTESRKPLGLVDEIFGPVKNPYYVVRYNSENDVPAGI 270

Query: 1132 SEGTS-VSFVTDFAYHVLNDKNLYKKGYDASGENDEELGDEVEFSDDEKEAEYRKAQRMA 956
              GT+ VS V +FA HVLN+K+LY+KGYDASG  DEEL DEVEFSDDEKEAEYRK Q+M 
Sbjct: 271  QGGTTLVSCVPEFAEHVLNNKDLYRKGYDASGAYDEELFDEVEFSDDEKEAEYRKMQKMT 330

Query: 955  SKGSSDRKRGNQEFVARKKVQHKDRSWKNGQPPAQPLGGPSNHTNMANQFCTPPVETXXX 776
             +G +D+  G      +K  + K    ++  PP  P+  P    N+ N     P      
Sbjct: 331  KRGVNDQNPGK-----KKNNKKKFSPKEHVLPPNAPVASPHVFPNVPNAPAAAP------ 379

Query: 775  XXXXXXXXXXXXXXXXXXXXXXXALQVPHANYCTPNLMPANGVWMNGMP-GQQQQQIIFH 599
                                     Q  +A    PN   AN +W N     QQ Q  +  
Sbjct: 380  -FVNKGNYSPFSGIGQGGTTTVSPFQPLNAG---PN-FAANSMWANQTTFPQQPQPSLPP 434

Query: 598  NGFPMNGMAIQQPGHYQQSPQMLNGFP-SGMPFQQQFDPNQRMMQNMALPYGQPNFSSGP 422
            N FP N M+     +Y Q+ Q  + FP  G+PFQQQ +P+        +P  QPN  S  
Sbjct: 435  NAFPSNAMS-----YYPQNTQFSHQFPVPGIPFQQQMNPSHGTHFPTMMPGVQPNIFSQQ 489

Query: 421  CASWPGNLGQPGLNQAQFGFGLPGPHPHTSFNAGDSLGFSNGSFEQQSNGMPP------P 260
                PG LGQ  + Q  F      P                  F+ Q  G PP      P
Sbjct: 490  PMYAPGFLGQNQMPQQSFQQIQQPP-----------------IFQAQQQGFPPTELQQRP 532

Query: 259  STMQGNFSTPNQNSPRATSTRGRKPY 182
            S + GN   P+Q  P ++ +RGR  +
Sbjct: 533  SPISGN---PSQFHPGSSGSRGRPSF 555