BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006630
         (1476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15328.3| unnamed protein product [Vitis vinifera]              602   e-169
ref|XP_002265397.2| PREDICTED: pentatricopeptide repeat-containi...   595   e-168
ref|XP_003536123.1| PREDICTED: pentatricopeptide repeat-containi...   578   e-162
ref|XP_002514631.1| pentatricopeptide repeat-containing protein,...   568   e-159
ref|XP_004138218.1| PREDICTED: pentatricopeptide repeat-containi...   568   e-159

>emb|CBI15328.3| unnamed protein product [Vitis vinifera]
          Length = 532

 Score =  602 bits (1551), Expect = e-169
 Identities = 302/490 (61%), Positives = 373/490 (76%), Gaps = 19/490 (3%)
 Frame = -1

Query: 1473 MWRAS------HLRRFLLCKISTPSIKSQNLSSSLLTHSSKPISSHFSNP-LFLYPKTFS 1315
            MWR+S       LRR LL   S+ S  S + SSS    SS  + S+  +P L L P    
Sbjct: 1    MWRSSTPLTSLQLRRLLLRCFSSSSSSSSSSSSS---SSSSLVQSYCLSPTLSLDPYCLC 57

Query: 1314 TS----TPPSF--------EHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHFS 1171
            +S      PSF        + NN        I+Q ++ ELLK  + + +P+ QRL L FS
Sbjct: 58   SSQRHFVSPSFPLSRRFSSQPNNSADDDHSQIAQSLSSELLKDPDSEPVPIIQRLQLSFS 117

Query: 1170 YIQLTPSLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIH 991
            +I  +P L LQ LN S +AGR+VL F++W+S+ P F H DET S+ VDYFGRRKDFK IH
Sbjct: 118  HITPSPPLILQTLNTSPDAGRTVLGFYKWLSSNPKFVHSDETISFFVDYFGRRKDFKAIH 177

Query: 990  DVLVSGKGITGSKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCD 811
            +VL+ G+   G+KTL S IDRLVRAGR +Q V+FF+RME +YGF RDR+SL +VV+ LC+
Sbjct: 178  EVLMDGRNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKLCE 237

Query: 810  HGFASHAEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAY 631
            HGFASHAEK+VK++ANE FP+E  CD+L++GWCVDGKLDEA+RLA EM+RGGFE+GT+AY
Sbjct: 238  HGFASHAEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTMAY 297

Query: 630  NSILDCVCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALN 451
            NSILDC+CKLCRKKDPFRL+ EAEKIL++MDVAG+PRN ETFNVLI N CKIRKTE+A+ 
Sbjct: 298  NSILDCICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDAMK 357

Query: 450  LFERMGEWGCAPDSTTYLILIRSLFQAARVGEGDEMIDRMKSAGFGDAIDKKAYYGFLKI 271
            LF RMGEWGC P+ TT+L+L RSL+QAARVGEGDEMIDRMKSAGFG+A+DKKAYY F+KI
Sbjct: 358  LFYRMGEWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFIKI 417

Query: 270  LCGIERIDHAMEIFKKMKSDGCKPGVPTYDLLIGKLGAHGRGERANALFREAMKKELPVQ 91
            LCGIERIDHAM +F KMK DGCKPG+ TYDLL+GKL AHGR ++ANALF EA+ + +PV+
Sbjct: 418  LCGIERIDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANALFSEAVNRGVPVE 477

Query: 90   PIVYKVDPRF 61
               YK+DPRF
Sbjct: 478  SKAYKLDPRF 487


>ref|XP_002265397.2| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
            mitochondrial-like [Vitis vinifera]
          Length = 516

 Score =  595 bits (1535), Expect = e-168
 Identities = 282/432 (65%), Positives = 349/432 (80%)
 Frame = -1

Query: 1356 HFSNPLFLYPKTFSTSTPPSFEHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLH 1177
            HF +P F   + FS+      + NN        I+Q ++ ELLK  + + +P+ QRL L 
Sbjct: 46   HFVSPSFPLSRRFSS------QPNNSADDDHSQIAQSLSSELLKDPDSEPVPIIQRLQLS 99

Query: 1176 FSYIQLTPSLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKV 997
            FS+I  +P L LQ LN S +AGR+VL F++W+S+ P F H DET S+ VDYFGRRKDFK 
Sbjct: 100  FSHITPSPPLILQTLNTSPDAGRTVLGFYKWLSSNPKFVHSDETISFFVDYFGRRKDFKA 159

Query: 996  IHDVLVSGKGITGSKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTAL 817
            IH+VL+ G+   G+KTL S IDRLVRAGR +Q V+FF+RME +YGF RDR+SL +VV+ L
Sbjct: 160  IHEVLMDGRNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKL 219

Query: 816  CDHGFASHAEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTL 637
            C+HGFASHAEK+VK++ANE FP+E  CD+L++GWCVDGKLDEA+RLA EM+RGGFE+GT+
Sbjct: 220  CEHGFASHAEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTM 279

Query: 636  AYNSILDCVCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEA 457
            AYNSILDC+CKLCRKKDPFRL+ EAEKIL++MDVAG+PRN ETFNVLI N CKIRKTE+A
Sbjct: 280  AYNSILDCICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDA 339

Query: 456  LNLFERMGEWGCAPDSTTYLILIRSLFQAARVGEGDEMIDRMKSAGFGDAIDKKAYYGFL 277
            + LF RMGEWGC P+ TT+L+L RSL+QAARVGEGDEMIDRMKSAGFG+A+DKKAYY F+
Sbjct: 340  MKLFYRMGEWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFI 399

Query: 276  KILCGIERIDHAMEIFKKMKSDGCKPGVPTYDLLIGKLGAHGRGERANALFREAMKKELP 97
            KILCGIERIDHAM +F KMK DGCKPG+ TYDLL+GKL AHGR ++ANALF EA+ + +P
Sbjct: 400  KILCGIERIDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANALFSEAVNRGVP 459

Query: 96   VQPIVYKVDPRF 61
            V+   YK+DPRF
Sbjct: 460  VESKAYKLDPRF 471


>ref|XP_003536123.1| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
            mitochondrial-like [Glycine max]
          Length = 509

 Score =  578 bits (1490), Expect = e-162
 Identities = 292/467 (62%), Positives = 345/467 (73%), Gaps = 2/467 (0%)
 Frame = -1

Query: 1455 LRRFLLCKISTPSIKSQNLSSSLL--THSSKPISSHFSNPLFLYPKTFSTSTPPSFEHNN 1282
            LRR LL   S P      +  S L   HSS    SHF +     P  F T       H +
Sbjct: 9    LRRLLLRSRSLPFTSPSPIHHSPLFPRHSS----SHFYSRTLFTPSFFIT------RHFS 58

Query: 1281 KHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHFSYIQLTPSLYLQVLNQSSEAGRSV 1102
                T E I+  ++ ELLK  + D+L + QRL+L FS+I  TP+L LQ LN S +AGR+V
Sbjct: 59   SETQTDE-IASSLSSELLKEPDSDALSVSQRLNLSFSHITPTPNLILQTLNLSPQAGRTV 117

Query: 1101 LDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIHDVLVSGKGITGSKTLASCIDRLV 922
            L FHQW+S+ P F H D+T SY VDYFGRRKDFK  HDVL +     G KTLAS IDRLV
Sbjct: 118  LGFHQWLSSNPQFSHTDDTLSYFVDYFGRRKDFKATHDVLAAASPAAGPKTLASAIDRLV 177

Query: 921  RAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCDHGFASHAEKMVKSLANEFFPDEV 742
            RAGR SQ V FFERME++YG  RDRDSLK+VV  LC  GFAS+AEKMVK LA EFFPDE 
Sbjct: 178  RAGRSSQAVQFFERMERDYGLKRDRDSLKVVVEKLCSEGFASYAEKMVKDLAREFFPDEA 237

Query: 741  TCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAYNSILDCVCKLCRKKDPFRLQGEA 562
            TCD+L+RGWC+DGKLDEA+RLAGEMYRGGF+LG  AYN++LDCVCKLCR+KDPF+L  EA
Sbjct: 238  TCDMLIRGWCIDGKLDEAQRLAGEMYRGGFDLGVGAYNAMLDCVCKLCREKDPFQLHSEA 297

Query: 561  EKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALNLFERMGEWGCAPDSTTYLILIRS 382
            EK+L+EM+  G+PRNTETFNVLI N CKIRKTE+AL L   MGEWGC P+ TT+L+LIRS
Sbjct: 298  EKVLVEMEYRGVPRNTETFNVLITNLCKIRKTEDALGLLHSMGEWGCYPNETTFLVLIRS 357

Query: 381  LFQAARVGEGDEMIDRMKSAGFGDAIDKKAYYGFLKILCGIERIDHAMEIFKKMKSDGCK 202
            L+QAAR+ EGDEMIDRM+SAGFG+ +DKKAYY FLKILCGIER+DHA+ +F  MK DGC+
Sbjct: 358  LYQAARLEEGDEMIDRMRSAGFGEFLDKKAYYQFLKILCGIERVDHALSVFAMMKDDGCE 417

Query: 201  PGVPTYDLLIGKLGAHGRGERANALFREAMKKELPVQPIVYKVDPRF 61
            PGV TYDLL+GKLGAH R ++ NALF EA  + LPV    Y VDPR+
Sbjct: 418  PGVITYDLLMGKLGAHNRIDKVNALFNEAKSRGLPVILKEYAVDPRY 464


>ref|XP_002514631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223546235|gb|EEF47737.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 569

 Score =  568 bits (1464), Expect = e-159
 Identities = 273/447 (61%), Positives = 345/447 (77%), Gaps = 5/447 (1%)
 Frame = -1

Query: 1386 LTHSSKPISSHFSNPLFL---YPKTFSTSTPPSFEHNNKHLPTTENISQEITQELLKHTN 1216
            L  SS    +HF    FL     K FST T      NN  L     I+Q I+ EL+K+ N
Sbjct: 80   LAFSSYSAPTHFPKFAFLPLSLSKPFSTQT---LNPNNNVLEDPNPIAQSISAELIKNPN 136

Query: 1215 EDSLPLPQRLDLHFSYIQ--LTPSLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETF 1042
             DSL + QRL+LHFS+I   +TPS+ LQ LN S +AGR+VL FHQW+     FK+ DET 
Sbjct: 137  SDSLSILQRLNLHFSHINNSITPSIILQTLNLSPDAGRTVLGFHQWLVKVANFKNTDETI 196

Query: 1041 SYIVDYFGRRKDFKVIHDVLVSGKGITGSKTLASCIDRLVRAGRDSQTVAFFERMEKEYG 862
            S+ +DYFGRRKDF+  H++L   K + G K   S ++RLVRAGR ++ + FF+RME++YG
Sbjct: 197  SFFIDYFGRRKDFQSTHELLCDSKDVIGYKCFESMVNRLVRAGRATKVMGFFDRMERDYG 256

Query: 861  FVRDRDSLKLVVTALCDHGFASHAEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKR 682
            F RDR++L+LVV  LCD+G+AS+AEKMVK+LANE FPDE  CD+L++GWCVDGKLDEAKR
Sbjct: 257  FKRDRENLRLVVKMLCDNGYASYAEKMVKNLANEIFPDENICDLLIKGWCVDGKLDEAKR 316

Query: 681  LAGEMYRGGFELGTLAYNSILDCVCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFN 502
            LAGEMYRGGFE+GT+AYN+ILDCVCKLCR+KDPF+++ E EK+L+EMD  G+PRN ETFN
Sbjct: 317  LAGEMYRGGFEIGTVAYNAILDCVCKLCREKDPFKIESEVEKVLVEMDTRGVPRNVETFN 376

Query: 501  VLINNFCKIRKTEEALNLFERMGEWGCAPDSTTYLILIRSLFQAARVGEGDEMIDRMKSA 322
            VLI N CK+RKT++ALNLF RM EWGC PD TT+L+LIRSL+QAARVGEGDEMIDRMKS+
Sbjct: 377  VLITNLCKMRKTQDALNLFNRMREWGCDPDDTTFLVLIRSLYQAARVGEGDEMIDRMKSS 436

Query: 321  GFGDAIDKKAYYGFLKILCGIERIDHAMEIFKKMKSDGCKPGVPTYDLLIGKLGAHGRGE 142
            G+G+ +DKKAYYGFLKILCGIER++HA+ +F+ MK+DGCKPG+ TYDLLIGK     R +
Sbjct: 437  GYGNKLDKKAYYGFLKILCGIERLEHAVSVFEMMKADGCKPGIKTYDLLIGKWCTRNRVD 496

Query: 141  RANALFREAMKKELPVQPIVYKVDPRF 61
            + NALF EA++  +PV P  YKVD ++
Sbjct: 497  KGNALFNEALRNGVPVAPKEYKVDEKY 523


>ref|XP_004138218.1| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
            mitochondrial-like [Cucumis sativus]
            gi|449477122|ref|XP_004154936.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g60960,
            mitochondrial-like [Cucumis sativus]
          Length = 522

 Score =  568 bits (1463), Expect = e-159
 Identities = 282/476 (59%), Positives = 346/476 (72%), Gaps = 11/476 (2%)
 Frame = -1

Query: 1455 LRRFLLCKISTPSIKS-----------QNLSSSLLTHSSKPISSHFSNPLFLYPKTFSTS 1309
            LR  +L  +S+ S  S           +NL+S          +  FS+PL+L     S S
Sbjct: 9    LRTLVLRSLSSSSTNSLKDSARTVLLHRNLTSLFHHFRHHGAALRFSSPLYL-----SLS 63

Query: 1308 TPPSFEHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHFSYIQLTPSLYLQVLN 1129
               S E  N H+  T   SQ +  ELLK  + D LP+ QRL L FS+++  P L    LN
Sbjct: 64   HSFSSESVNNHVDQT---SQSLASELLKDPDSDPLPITQRLQLSFSHVKPNPELVRNTLN 120

Query: 1128 QSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIHDVLVSGKGITGSKT 949
             SSEAGR+VL F++W+ + P F H DET SY VD+FGRRKDF  + +VL  G GI G KT
Sbjct: 121  LSSEAGRTVLGFNEWLVSNPDFHHTDETISYFVDFFGRRKDFNAVQEVLAKGLGINGPKT 180

Query: 948  LASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCDHGFASHAEKMVKSL 769
            L S I R  RAGR ++ ++FFE ME  YG  RD++SL++VV  LC++GF SHAEKMVK L
Sbjct: 181  LKSSIHRFARAGRPTKLISFFETMETNYGLKRDKESLRMVVEKLCENGFGSHAEKMVKDL 240

Query: 768  ANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAYNSILDCVCKLCRKK 589
            ANEFFPDE  CD L++GWCV+ KLDEAKRLAGEMYRGGFELGT AYN++LDCVCKLCRKK
Sbjct: 241  ANEFFPDEAICDTLIKGWCVNEKLDEAKRLAGEMYRGGFELGTTAYNALLDCVCKLCRKK 300

Query: 588  DPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALNLFERMGEWGCAPDS 409
            DPFRL  EAE+IL+EMD  G+PRN ETFNVLINN CKIR+T +A+NLF RMGEWGC P++
Sbjct: 301  DPFRLDSEAEEILVEMDCRGVPRNVETFNVLINNLCKIRRTTDAVNLFHRMGEWGCHPNA 360

Query: 408  TTYLILIRSLFQAARVGEGDEMIDRMKSAGFGDAIDKKAYYGFLKILCGIERIDHAMEIF 229
             T+LILIRSL+QAAR GEGDEMIDRMKS G+GDA+DKKAYY F+ ILCGIERIDHA+ +F
Sbjct: 361  ETFLILIRSLYQAARTGEGDEMIDRMKSVGYGDALDKKAYYEFMNILCGIERIDHALVVF 420

Query: 228  KKMKSDGCKPGVPTYDLLIGKLGAHGRGERANALFREAMKKELPVQPIVYKVDPRF 61
             KMK DGC+PG+ TYDLL+GKL AH R ++AN+LF EA K+ +PV P  Y+VDP++
Sbjct: 421  AKMKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKY 476